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Gene Card

Best human hits

PSMD5

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010016

Gene Model ID

KH2012:KH.C9.468

Location

KhC9:5859056..5864899

Transcript Models and Sequences

  KH2012:KH.C9.468.v1.A.nonSL10-1
KH2012:KH.C9.468.v1.A.nonSL11-1
KH2012:KH.C9.468.v1.A.nonSL14-1
KH2012:KH.C9.468.v1.A.nonSL15-1
KH2012:KH.C9.468.v1.A.nonSL16-1
KH2012:KH.C9.468.v1.A.nonSL2-1
KH2012:KH.C9.468.v1.A.nonSL3-1
KH2012:KH.C9.468.v1.A.nonSL4-1
KH2012:KH.C9.468.v1.A.nonSL5-1
KH2012:KH.C9.468.v1.A.nonSL6-1
KH2012:KH.C9.468.v1.A.nonSL7-1
KH2012:KH.C9.468.v1.A.nonSL8-1
KH2012:KH.C9.468.v1.A.nonSL9-1
KH2012:KH.C9.468.v1.A.SL12-1
KH2012:KH.C9.468.v1.A.SL13-1
KH2012:KH.C9.468.v1.R.ND1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000006547
NCBI Reference Sequence XM_002129064.4
Collections

Gateway full ORF

2 results

cima8111970

Plate: VES74_G04

cien183558

Plate: VES98_D15

Gene collection 1 (N. Satoh)

1 result

cieg001l20

Plate: R1CiGC15j05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
ARM-like Gene3D Armadillo-like helical
PSMD5 PANTHER 26S proteasome non-ATPase regulatory subunit 5
PSMD5 Pfam 26S proteasome non-ATPase regulatory subunit 5
ARM-type_fold SUPERFAMILY Armadillo-type fold

GOSlim

26 results

GO Term Annotation Origin Type
protein polyubiquitination Orthology biological process
binding Orthology molecular function
protein binding Orthology molecular function
nucleoplasm Orthology cellular component
cytosol Orthology cellular component
transmembrane transport Orthology biological process
negative regulation of canonical Wnt signaling pathway Orthology biological process
positive regulation of canonical Wnt signaling pathway Orthology biological process
intracellular signal transduction Orthology biological process
protein phosphorylation Orthology biological process
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
G2/M transition of mitotic cell cycle Orthology biological process
peptidase activity, acting on L-amino acid peptides Orthology molecular function
proteolysis Orthology biological process
cytokine-mediated signaling pathway Orthology biological process
transcription factor activity, sequence-specific DNA binding Orthology molecular function
cell surface receptor signaling pathway Orthology biological process
immune response Orthology biological process
mRNA catabolic process Orthology biological process
cellular protein modification process Orthology biological process
cell-cell signaling Orthology biological process
anatomical structure morphogenesis Orthology biological process
animal organ development Orthology biological process
immune system process Orthology biological process
cell differentiation Orthology biological process

GO (Orthology)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
MAPK cascade Hs biological process
protein polyubiquitination Hs biological process
proteasome complex Hs cellular component
binding Hs molecular function
protein binding Hs molecular function
nucleoplasm Hs cellular component
cytosol Hs cellular component
proteasome regulatory particle, base subcomplex Hs cellular component
negative regulation of G2/M transition of mitotic cell cycle Hs biological process
protein deubiquitination Hs biological process
proteasome accessory complex Hs cellular component
anaphase-promoting complex-dependent catabolic process Hs biological process
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Hs biological process
tumor necrosis factor-mediated signaling pathway Hs biological process
NIK/NF-kappaB signaling Hs biological process
Fc-epsilon receptor signaling pathway Hs biological process
proteasome-mediated ubiquitin-dependent protein catabolic process Hs biological process
proteasome assembly Hs biological process
regulation of mRNA stability Hs biological process
post-translational protein modification Hs biological process
T cell receptor signaling pathway Hs biological process
negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle Hs biological process
transmembrane transport Hs biological process
Wnt signaling pathway, planar cell polarity pathway Hs biological process
interleukin-1-mediated signaling pathway Hs biological process
proteasome regulatory particle assembly Hs biological process
negative regulation of canonical Wnt signaling pathway Hs biological process
positive regulation of canonical Wnt signaling pathway Hs biological process
regulation of hematopoietic stem cell differentiation Hs biological process

GO (Blast)

7 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
proteasome complex Hs cellular component 325 7.65e-106
binding Hs molecular function 325 7.65e-106
protein binding Hs molecular function 325 7.65e-106
nucleoplasm Hs cellular component 325 7.65e-106
cytosol Hs cellular component 325 7.65e-106
proteasome regulatory particle, base subcomplex Hs cellular component 325 7.65e-106
proteasome accessory complex Hs cellular component 325 7.65e-106

GO (InterProScan)

2 results

GO Term Analysis Type e-value
binding SUPERFAMILY molecular function 1.43E-27
proteasome assembly PANTHER biological process 1.1E-144

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