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Gene Card

Best human hits

LHX1; LMX1A; LMX1B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010180

Gene Model ID

KH2012:KH.C9.616

Location

KhC9:2933012..2948044

Transcript Models and Sequences

  KH2012:KH.C9.616.v1.A.SL1-1

External Database Gene Card

External database links

No result

Collections

Gene collection 1 (N. Satoh)

1 result

citb030f24

Plate: R1CiGC31h17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

1 results

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
Homeobox_dom ProSiteProfiles Homeobox domain
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_dom CDD Homeobox domain
Znf_LIM Pfam Zinc finger, LIM-type
Homeobox_dom Pfam Homeobox domain
Znf_LIM SMART Zinc finger, LIM-type
Znf_LIM ProSiteProfiles Zinc finger, LIM-type
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox_dom SMART Homeobox domain
Znf_LIM ProSitePatterns Zinc finger, LIM-type

GOSlim

24 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Orthology molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcription corepressor activity Blast molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
multicellular organism development Orthology biological process
axon guidance Orthology biological process
central nervous system development Orthology biological process
brain development Orthology biological process
regulation of gene expression Orthology biological process
neuron differentiation Orthology biological process
macromolecular complex Blast cellular component
sequence-specific DNA binding Orthology molecular function
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
metal ion binding Orthology molecular function
cellular component organization Orthology biological process
nervous system process Orthology biological process
cell development Orthology biological process

GO (Orthology)

31 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription factor activity, RNA polymerase II core promoter sequence-specific Hs molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
regulation of cell growth Hs biological process
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
multicellular organism development Hs biological process
axon guidance Hs biological process
central nervous system development Hs biological process
brain development Hs biological process
memory Hs biological process
locomotory behavior Hs biological process
dorsal/ventral pattern formation Hs biological process
regulation of gene expression Hs biological process
cerebellum development Hs biological process
central nervous system neuron differentiation Hs biological process
neuron differentiation Hs biological process
midbrain development Hs biological process
olfactory behavior Hs biological process
sequence-specific DNA binding Hs molecular function
negative regulation of neuron differentiation Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function
synapse organization Hs biological process
dopaminergic neuron differentiation Hs biological process

GO (Blast)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 219 2.97e-65
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 219 2.97e-65
transcription factor activity, RNA polymerase II core promoter sequence-specific Hs molecular function 219 2.97e-65
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 204 8.13e-60
DNA binding Hs molecular function 219 2.97e-65
transcription factor activity, sequence-specific DNA binding Hs molecular function 219 2.97e-65
transcription corepressor activity Hs molecular function 152 2.52e-40
protein binding Hs molecular function 219 2.97e-65
nucleus Hs cellular component 219 2.97e-65
macromolecular complex Hs cellular component 152 2.52e-40
sequence-specific DNA binding Hs molecular function 219 2.97e-65
metal ion binding Hs molecular function 219 2.97e-65

GO (InterProScan)

3 results

GO Term Analysis Type e-value
DNA binding SMART molecular function 2.4E-21
regulation of transcription, DNA-templated ProSitePatterns biological process
sequence-specific DNA binding ProSitePatterns molecular function

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