Aniseed - Gene card

Gene Card

Best human hits

RPL12

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010305

Gene Model ID

KH2012:KH.C9.73

Location

KhC9:5148737..5150591

Transcript Models and Sequences

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000012950
NCBI Reference Sequence	XM_002131525.4
NCBI Reference Sequence	XR_717398.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

ciad015o19

Plate: R1CiGC02l23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term	Analysis	Definition
Ribosomal_L11/L12	SMART	Ribosomal protein L11/L12
Ribosomal_L11_C_sf	Gene3D	Ribosomal protein L11, C-terminal domain superfamily
Ribosomal_L11/L12_N_sf	SUPERFAMILY	Ribosomal protein L11/L12, N-terminal domain superfamily
Ribosomal_L11_N	Pfam	Ribosomal protein L11, N-terminal
Ribosomal_L11/L12	PANTHER	Ribosomal protein L11/L12
Ribosomal_L11/L12_N_sf	Gene3D	Ribosomal protein L11/L12, N-terminal domain superfamily
Ribosomal_L11_CS	ProSitePatterns	Ribosomal protein L11, conserved site
Ribosomal_L11_C	Pfam	Ribosomal protein L11, C-terminal
Ribosomal_L11_C_sf	SUPERFAMILY	Ribosomal protein L11, C-terminal domain superfamily
Ribosomal_L11/L12	CDD	Ribosomal protein L11/L12
Ribosomal_L11/L12	Hamap	Ribosomal protein L11/L12

GOSlim

13 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
focal adhesion	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
membrane	Orthology	cellular component
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component

GO (Orthology)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
ribosomal large subunit assembly	Hs	biological process
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
cytosol	Hs	cellular component
ribosome	Hs	cellular component
focal adhesion	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
membrane	Hs	cellular component
rRNA binding	Hs	molecular function
cytosolic large ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
extracellular exosome	Hs	cellular component

GO (Blast)