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Gene Card

Best human hits

ATOH1; ATOH8; NEUROD4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010460

Gene Model ID

KH2012:KH.C9.872

Location

KhC9:879977..883966

Transcript Models and Sequences

  KH2012:KH.C9.872.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000008710
ENSEMBL ENSCING00000021980
Collections

Gateway full ORF

2 results

cien130832

Plate: VES90_A20

cien181375

Plate: VES98_M05

Gene collection 1 (N. Satoh)

2 results

cicl051a04

Plate: R1CiGC13n20

citb058g01

Plate: R1CiGC45p14

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
bHLH_dom CDD Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom Pfam Myc-type, basic helix-loop-helix (bHLH) domain
HLH_DNA-bd_sf SUPERFAMILY Helix-loop-helix DNA-binding domain superfamily
bHLH_dom ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain
ATOH8 PANTHER Protein atonal homologue 8
HLH_DNA-bd_sf Gene3D Helix-loop-helix DNA-binding domain superfamily
bHLH_dom SMART Myc-type, basic helix-loop-helix (bHLH) domain

GOSlim

23 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
multicellular organism development Orthology biological process
nervous system development Orthology biological process
transcription factor binding Orthology molecular function
nuclear speck Orthology cellular component
cell differentiation Orthology biological process
sequence-specific DNA binding Blast molecular function
negative regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
protein dimerization activity Orthology molecular function
anatomical structure formation involved in morphogenesis Orthology biological process
cell proliferation Orthology biological process
cell surface receptor signaling pathway Orthology biological process
chromatin binding Blast molecular function

GO (Orthology)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
formation of primary germ layer Hs biological process
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
multicellular organism development Hs biological process
nervous system development Hs biological process
transcription factor binding Hs molecular function
nuclear speck Hs cellular component
cell differentiation Hs biological process
activating transcription factor binding Hs molecular function
tube formation Hs biological process
positive regulation of endothelial cell differentiation Hs biological process
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
protein dimerization activity Hs molecular function
myoblast proliferation Hs biological process
SMAD protein signal transduction Hs biological process
E-box binding Hs molecular function

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 63.2 2.34e-10
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 110 2.86e-26
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 63.2 2.34e-10
DNA binding Hs molecular function 110 2.86e-26
transcription factor activity, sequence-specific DNA binding Hs molecular function 110 2.86e-26
nucleus Hs cellular component 110 2.86e-26
nucleoplasm Hs cellular component 110 2.86e-26
cytoplasm Hs cellular component 110 2.86e-26
transcription factor binding Hs molecular function 110 2.86e-26
nuclear speck Hs cellular component 110 2.86e-26
chromatin DNA binding Hs molecular function 63.2 2.34e-10
activating transcription factor binding Hs molecular function 110 2.86e-26
sequence-specific DNA binding Hs molecular function 63.2 2.34e-10
protein dimerization activity Hs molecular function 110 2.86e-26
E-box binding Hs molecular function 110 2.86e-26

GO (InterProScan)

4 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding PANTHER molecular function 5.7E-68
regulation of transcription, DNA-templated PANTHER biological process 5.7E-68
cell differentiation PANTHER biological process 5.7E-68
protein dimerization activity Gene3D molecular function 2.3E-19

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