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GENE CARD

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Gene Card

Best human hits

NAV1; NAV2; NAV3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010614

Gene Model ID

KH2012:KH.L108.20

Location

KhL108:269293..314133

Transcript Models and Sequences

  KH2012:KH.L108.20.v1.A.SL3-1
KH2012:KH.L108.20.v2.A.SL4-1
KH2012:KH.L108.20.v2.A.SL6-1
KH2012:KH.L108.20.v3.A.SL1-1
KH2012:KH.L108.20.v4.A.SL5-1
KH2012:KH.L108.20.v5.A.SL3-1
KH2012:KH.L108.20.v6.A.SL2-1

External Database Gene Card

External database links

5 results

Database Gene ID
ENSEMBL ENSCING00000000282
ENSEMBL ENSCING00000016113
ENSEMBL ENSCING00000019341
NCBI Reference Sequence XM_002128380.4
NCBI Reference Sequence XM_018815015.1
Collections

Gateway full ORF

2 results

cien88871

Plate: VES84_M07

cien229822

Plate: VES105_C16

Gene collection 1 (N. Satoh)

2 results

cicl059m06

Plate: R1CiGC15k05

cign026a01

Plate: R1CiGC42k05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
CH-domain Pfam Calponin homology domain
CH_dom_sf SUPERFAMILY CH domain superfamily
CH-domain SMART Calponin homology domain
CH-domain ProSiteProfiles Calponin homology domain
CH_dom_sf Gene3D CH domain superfamily

GOSlim

33 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytoskeleton Orthology cellular component
microtubule Orthology cellular component
multicellular organism development Orthology biological process
nervous system development Orthology biological process
sensory perception of sound Orthology biological process
microtubule binding Orthology molecular function
microtubule cytoskeleton Orthology cellular component
membrane Orthology cellular component
hydrolase activity Orthology molecular function
cell differentiation Orthology biological process
microtubule-based process Orthology biological process
organelle organization Orthology biological process
cell migration Orthology biological process
generation of neurons Orthology biological process
nucleoside-triphosphatase activity Orthology molecular function
extracellular region part Orthology cellular component
membrane part Orthology cellular component
whole membrane Orthology cellular component
nuclear outer membrane-endoplasmic reticulum membrane network Orthology cellular component
nuclear membrane Orthology cellular component
bounding membrane of organelle Orthology cellular component
sensory perception Orthology biological process
anion binding Orthology molecular function
carbohydrate derivative binding Orthology molecular function
central nervous system development Orthology biological process
cell projection part Orthology cellular component
axon Orthology cellular component

GO (Orthology)

33 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
microtubule bundle formation Hs biological process
neuron migration Hs biological process
helicase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
proteinaceous extracellular matrix Hs cellular component
interstitial matrix Hs cellular component
nucleus Hs cellular component
nuclear outer membrane Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
cytoskeleton Hs cellular component
microtubule Hs cellular component
negative regulation of microtubule depolymerization Hs biological process
multicellular organism development Hs biological process
nervous system development Hs biological process
sensory perception of sound Hs biological process
sensory perception of smell Hs biological process
locomotory behavior Hs biological process
microtubule binding Hs molecular function
heparin binding Hs molecular function
microtubule cytoskeleton Hs cellular component
membrane Hs cellular component
hydrolase activity Hs molecular function
optic nerve development Hs biological process
glossopharyngeal nerve development Hs biological process
vagus nerve development Hs biological process
cell differentiation Hs biological process
negative regulation of cell migration Hs biological process
positive regulation of microtubule polymerization Hs biological process
axon initial segment Hs cellular component
microtubule end Hs cellular component

GO (Blast)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 152 6.28e-37
helicase activity Hs molecular function 152 6.28e-37
protein binding Hs molecular function 152 6.28e-37
ATP binding Hs molecular function 152 6.28e-37
proteinaceous extracellular matrix Hs cellular component 152 6.28e-37
interstitial matrix Hs cellular component 152 6.28e-37
nucleus Hs cellular component 152 6.28e-37
nuclear outer membrane Hs cellular component 146 5.84e-35
nucleoplasm Hs cellular component 152 6.28e-37
cytoplasm Hs cellular component 105 1.32e-22
cytoskeleton Hs cellular component 105 1.32e-22
microtubule Hs cellular component 105 1.32e-22
microtubule binding Hs molecular function 146 5.84e-35
heparin binding Hs molecular function 152 6.28e-37
microtubule cytoskeleton Hs cellular component 105 1.32e-22
membrane Hs cellular component 146 5.84e-35
hydrolase activity Hs molecular function 152 6.28e-37
axon initial segment Hs cellular component 105 1.32e-22
microtubule end Hs cellular component 146 5.84e-35

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding Pfam molecular function 1.0E-10

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