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GENE CARD

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  1. Gene 'Phmamm.CG.MTP2014.S1...' > 
  2. Gene 'Phfumi.CG.MTP2014.S2...' > 

Gene Card

Best human hits

RBX1; RNF126; RNF7

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010687

Gene Model ID

KH2012:KH.L112.13

Location

KhL112:88760..89847

Transcript Models and Sequences

  KH2012:KH.L112.13.v1.A.ND1-1
KH2012:KH.L112.13.v1.A.nonSL10-1
KH2012:KH.L112.13.v1.A.nonSL11-1
KH2012:KH.L112.13.v1.A.nonSL12-1
KH2012:KH.L112.13.v1.A.nonSL13-1
KH2012:KH.L112.13.v1.A.nonSL15-1
KH2012:KH.L112.13.v1.A.nonSL16-1
KH2012:KH.L112.13.v1.A.nonSL3-1
KH2012:KH.L112.13.v1.A.nonSL4-1
KH2012:KH.L112.13.v1.A.nonSL5-1
KH2012:KH.L112.13.v1.A.nonSL6-1
KH2012:KH.L112.13.v1.A.nonSL8-1
KH2012:KH.L112.13.v1.A.nonSL9-1
KH2012:KH.L112.13.v1.A.SL14-1
KH2012:KH.L112.13.v1.A.SL2-1
KH2012:KH.L112.13.v1.A.SL7-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000001372
NCBI Reference Sequence XM_002127589.3
Collections

Gateway full ORF

1 result

cien105834

Plate: VES86_C19

Gene collection 1 (N. Satoh)

1 result

cieg042m15

Plate: R1CiGC22i24

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
Znf_RING ProSiteProfiles Zinc finger, RING-type
Znf_RING_H2 Pfam Zinc finger, RING-H2-type
Znf_RING/FYVE/PHD Gene3D Zinc finger, RING/FYVE/PHD-type

GOSlim

23 results

GO Term Annotation Origin Type
ubiquitin-protein transferase activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
transcription factor binding Blast molecular function
zinc ion binding Orthology molecular function
protein ubiquitination Orthology biological process
transferase activity Blast molecular function
ubiquitin protein ligase binding Blast molecular function
metal ion binding Orthology molecular function
transition metal ion binding Orthology molecular function
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
ubiquitin-like protein transferase activity Orthology molecular function
proteolysis Orthology biological process
intracellular part Orthology cellular component
cellular protein modification process Orthology biological process
protein modification by small protein conjugation Orthology biological process
response to stimulus Orthology biological process
receptor binding Blast molecular function
cytoplasmic part Blast cellular component

GO (Orthology)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
ubiquitin-protein transferase activity Hs molecular function
copper ion binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
anaphase-promoting complex Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
zinc ion binding Hs molecular function
protein ubiquitination Hs biological process
NEDD8 transferase activity Hs molecular function
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Hs biological process
Cul2-RING ubiquitin ligase complex Hs cellular component
Cul3-RING ubiquitin ligase complex Hs cellular component
Cul5-RING ubiquitin ligase complex Hs cellular component
Cul7-RING ubiquitin ligase complex Hs cellular component
nuclear SCF ubiquitin ligase complex Hs cellular component
post-translational protein modification Hs biological process
protein neddylation Hs biological process
metal ion binding Hs molecular function
response to redox state Hs biological process
ubiquitin protein ligase activity Hs molecular function
Cul4-RING E3 ubiquitin ligase complex Hs cellular component
cullin family protein binding Hs molecular function

GO (Blast)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
ubiquitin-protein transferase activity Hs molecular function 155 6.11e-51
epidermal growth factor receptor binding Hs molecular function 44.3 1.65e-06
copper ion binding Hs molecular function 155 6.11e-51
protein binding Hs molecular function 155 6.11e-51
nucleus Hs cellular component 155 6.11e-51
nucleoplasm Hs cellular component 155 6.11e-51
anaphase-promoting complex Hs cellular component 155 6.11e-51
cytoplasm Hs cellular component 155 6.11e-51
cytosol Hs cellular component 155 6.11e-51
transcription factor binding Hs molecular function 90.5 3.68e-25
zinc ion binding Hs molecular function 155 6.11e-51
transferase activity Hs molecular function 90.5 3.68e-25
SCF ubiquitin ligase complex Hs cellular component 90.5 3.68e-25
NEDD8 transferase activity Hs molecular function 155 6.11e-51
VCB complex Hs cellular component 90.5 3.68e-25
cullin-RING ubiquitin ligase complex Hs cellular component 90.5 3.68e-25
Cul2-RING ubiquitin ligase complex Hs cellular component 155 6.11e-51
Cul3-RING ubiquitin ligase complex Hs cellular component 155 6.11e-51
Cul4A-RING E3 ubiquitin ligase complex Hs cellular component 90.5 3.68e-25
Cul4B-RING E3 ubiquitin ligase complex Hs cellular component 90.5 3.68e-25
Cul5-RING ubiquitin ligase complex Hs cellular component 155 6.11e-51
Cul7-RING ubiquitin ligase complex Hs cellular component 155 6.11e-51
ubiquitin protein ligase binding Hs molecular function 90.5 3.68e-25
ubiquitin-ubiquitin ligase activity Hs molecular function 90.5 3.68e-25
nuclear SCF ubiquitin ligase complex Hs cellular component 155 6.11e-51
metal ion binding Hs molecular function 155 6.11e-51
ubiquitin protein ligase activity Hs molecular function 155 6.11e-51
Cul4-RING E3 ubiquitin ligase complex Hs cellular component 155 6.11e-51
cullin family protein binding Hs molecular function 155 6.11e-51

GO (InterProScan)

1 result

GO Term Analysis Type e-value
zinc ion binding Pfam molecular function 5.5E-21

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