Aniseed - Gene card

Gene Card

Best human hits

IMPACT

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010755

Gene Model ID

KH2012:KH.L116.25

Location

KhL116:200048..201751

Transcript Models and Sequences

KH2012:KH.L116.25.v1.A.nonSL2-1
KH2012:KH.L116.25.v1.A.nonSL3-1
KH2012:KH.L116.25.v1.A.nonSL4-1
KH2012:KH.L116.25.v1.A.nonSL5-1
KH2012:KH.L116.25.v1.A.nonSL6-1
KH2012:KH.L116.25.v1.R.ND1-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000014882

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cieg020p08

Plate: R1CiGC18d24

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
RWD-domain	SMART	RWD domain
Ribosomal_S5_D2-typ_fold	SUPERFAMILY	Ribosomal protein S5 domain 2-type fold
RWD-domain	Pfam	RWD domain
UBQ-conjugating_enzyme/RWD	SUPERFAMILY	Ubiquitin-conjugating enzyme/RWD-like
Impact_N	Pfam	Impact, N-terminal
Impact_N_sf	Gene3D	Impact, N-terminal domain superfamily
UPF0029_Impact_CS	ProSitePatterns	Uncharacterised protein family UPF0029, Impact, conserved site
UBQ-conjugating_enzyme/RWD	Gene3D	Ubiquitin-conjugating enzyme/RWD-like
Impact	PANTHER	Impact family
RWD-domain	ProSiteProfiles	RWD domain

GOSlim

23 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
actin binding	Orthology	molecular function
protein binding	Orthology	molecular function
cytoplasm	Orthology	cellular component
nervous system development	Orthology	biological process
cell differentiation	Orthology	biological process
negative regulation of cell death	Orthology	biological process
protein phosphorylation	Orthology	biological process
macromolecular complex	Orthology	cellular component
regulation of gene expression	Orthology	biological process
translational initiation	Orthology	biological process
protein autophosphorylation	Orthology	biological process
regulation of catalytic activity	Orthology	biological process
protein kinase activity	Orthology	molecular function
cell communication	Orthology	biological process
cellular response to stress	Orthology	biological process
macromolecular complex binding	Orthology	molecular function
cell development	Orthology	biological process
neuron differentiation	Orthology	biological process
response to oxidative stress	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
cellular response to organic substance	Orthology	biological process
neuron projection morphogenesis	Orthology	biological process

GO (Orthology)

26 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
negative regulation of protein phosphorylation	Hs	biological process
actin binding	Hs	molecular function
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
polysome	Hs	cellular component
regulation of translation	Hs	biological process
regulation of translational initiation	Hs	biological process
nervous system development	Hs	biological process
cell differentiation	Hs	biological process
negative regulation of protein complex assembly	Hs	biological process
negative regulation of protein autophosphorylation	Hs	biological process
cellular response to amino acid starvation	Hs	biological process
cellular response to glucose starvation	Hs	biological process
ribosome binding	Hs	molecular function
positive regulation of neuron differentiation	Hs	biological process
negative regulation of cell death	Hs	biological process
regulation of eIF2 alpha phosphorylation by amino acid starvation	Hs	biological process
cellular response to hydrogen peroxide	Hs	biological process
positive regulation of translational initiation in response to starvation	Hs	biological process
cellular response to acidic pH	Hs	biological process
cellular response to UV-C	Hs	biological process
cellular response to benomyl	Hs	biological process
negative regulation of transcription from RNA polymerase II promoter in response to stress	Hs	biological process
neuron projection extension	Hs	biological process
cellular response to leucine starvation	Hs	biological process

GO (Blast)

5 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
actin binding	Hs	molecular function	257	2.71e-85
protein binding	Hs	molecular function	257	2.71e-85
cytoplasm	Hs	cellular component	257	2.71e-85
polysome	Hs	cellular component	257	2.71e-85
ribosome binding	Hs	molecular function	257	2.71e-85

GO (InterProScan)