Login
Help

GENE CARD

Submit your Data

  1. > 
  2. > 
  3. > 
  4. > 

Gene Card

Best human hits

TUBB; TUBB2B; TUBB4B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010819

Gene Model ID

KH2012:KH.L116.85

Location

KhL116:160165..163429

Transcript Models and Sequences

  KH2012:KH.L116.85.v1.A.nonSL10-1
KH2012:KH.L116.85.v1.A.nonSL11-1
KH2012:KH.L116.85.v1.A.nonSL12-1
KH2012:KH.L116.85.v1.A.nonSL13-1
KH2012:KH.L116.85.v1.A.nonSL15-1
KH2012:KH.L116.85.v1.A.nonSL2-1
KH2012:KH.L116.85.v1.A.nonSL3-1
KH2012:KH.L116.85.v1.A.nonSL4-1
KH2012:KH.L116.85.v1.A.nonSL5-1
KH2012:KH.L116.85.v1.A.nonSL6-1
KH2012:KH.L116.85.v1.A.nonSL7-1
KH2012:KH.L116.85.v1.A.nonSL8-1
KH2012:KH.L116.85.v1.A.nonSL9-1
KH2012:KH.L116.85.v1.R.ND1-1
KH2012:KH.L116.85.v2.A.SL14-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000007589
NCBI Reference Sequence XM_004226926.3
NCBI Reference Sequence XM_004226927.3
Collections

Gateway full ORF

2 results

cima826926

Plate: VES61_M05

cima833277

Plate: VES62_A12

Gene collection 1 (N. Satoh)

7 results

cieg057m19

Plate: R1CiGC24d04

cilv024f23

Plate: R1CiGC27g09

cieg025i08

Plate: R1CiGC19j11

cilv029b06

Plate: R1CiGC27d05

cicl048m06

Plate: R1CiGC13n01

citb033g23

Plate: R1CiGC31p04

cigd011h14

Plate: R1CiGC41a06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

2 results

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

14 results

IPR Term Analysis Definition
Tub_FtsZ_C SUPERFAMILY Tubulin/FtsZ, C-terminal
Tubulin_CS ProSitePatterns Tubulin, conserved site
Tubulin/FtsZ_2-layer-sand-dom SMART Tubulin/FtsZ, 2-layer sandwich domain
Tubulin PANTHER Tubulin
Beta_tubulin PRINTS Beta tubulin
Tubulin_FtsZ_GTPase SMART Tubulin/FtsZ, GTPase domain
Beta_tubulin PANTHER Beta tubulin
Tubulin_FtsZ_GTPase Pfam Tubulin/FtsZ, GTPase domain
Tubulin/FtsZ_C_sf Gene3D Tubulin/FtsZ, C-terminal domain superfamily
Tubulin_C Gene3D Tubulin, C-terminal
Tubulin/FtsZ_2-layer-sand-dom Pfam Tubulin/FtsZ, 2-layer sandwich domain
Tubulin/FtsZ_GTPase_sf Gene3D Tubulin/FtsZ, GTPase domain superfamily
Tubulin PRINTS Tubulin
Tubulin/FtsZ_GTPase_sf SUPERFAMILY Tubulin/FtsZ, GTPase domain superfamily

GOSlim

32 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
GTPase activity Blast molecular function
structural molecule activity Blast molecular function
protein binding Blast molecular function
GTP binding Blast molecular function
extracellular region Blast cellular component
nucleus Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
cytoskeleton Blast cellular component
microtubule Blast cellular component
microtubule-based process InterProScan biological process
microtubule cytoskeleton Blast cellular component
ubiquitin protein ligase binding Blast molecular function
myelin sheath Blast cellular component
cell body Blast cellular component
protein heterodimerization activity Blast molecular function
unfolded protein binding Blast molecular function
extracellular exosome Blast cellular component
extracellular vesicle Blast cellular component
RNA binding Blast molecular function
organelle organization Blast biological process
nuclear envelope Blast cellular component
intracellular organelle lumen Blast cellular component
cytoplasmic vesicle Blast cellular component
lysosome Blast cellular component
vacuolar part Blast cellular component
endomembrane system Blast cellular component
cytoplasmic part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
macromolecular complex Blast cellular component
receptor binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 926 0.0
double-stranded RNA binding Hs molecular function 926 0.0
GTPase activity Hs molecular function 926 0.0
structural molecule activity Hs molecular function 911 0.0
structural constituent of cytoskeleton Hs molecular function 926 0.0
protein binding Hs molecular function 915 0.0
GTP binding Hs molecular function 926 0.0
extracellular region Hs cellular component 926 0.0
nucleus Hs cellular component 926 0.0
nuclear envelope lumen Hs cellular component 911 0.0
cytoplasm Hs cellular component 926 0.0
cytosol Hs cellular component 926 0.0
cytoskeleton Hs cellular component 926 0.0
microtubule Hs cellular component 926 0.0
microtubule cytoskeleton Hs cellular component 915 0.0
ubiquitin protein ligase binding Hs molecular function 911 0.0
azurophil granule lumen Hs cellular component 926 0.0
cytoplasmic ribonucleoprotein granule Hs cellular component 911 0.0
MHC class I protein binding Hs molecular function 926 0.0
myelin sheath Hs cellular component 926 0.0
cell body Hs cellular component 911 0.0
protein heterodimerization activity Hs molecular function 915 0.0
unfolded protein binding Hs molecular function 926 0.0
extracellular exosome Hs cellular component 926 0.0
extracellular vesicle Hs cellular component 926 0.0

GO (InterProScan)

5 results

GO Term Analysis Type e-value
GTPase activity SMART molecular function 2.1E-69
structural constituent of cytoskeleton PANTHER molecular function 0.0
GTP binding PANTHER molecular function 0.0
microtubule PANTHER cellular component 0.0
microtubule-based process PANTHER biological process 0.0

Back to Top