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GENE CARD

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Gene Card

Best human hits

TUBA1A; TUBA3C; TUBA3D

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010869

Gene Model ID

KH2012:KH.L119.32

Location

KhL119:134283..137060

Transcript Models and Sequences

  KH2012:KH.L119.32.v1.A.ND1-1
KH2012:KH.L119.32.v1.A.nonSL10-1
KH2012:KH.L119.32.v1.A.nonSL11-1
KH2012:KH.L119.32.v1.A.nonSL12-1
KH2012:KH.L119.32.v1.A.nonSL13-1
KH2012:KH.L119.32.v1.A.nonSL2-1
KH2012:KH.L119.32.v1.A.nonSL3-1
KH2012:KH.L119.32.v1.A.nonSL4-1
KH2012:KH.L119.32.v1.A.nonSL5-1
KH2012:KH.L119.32.v1.A.nonSL6-1
KH2012:KH.L119.32.v1.A.nonSL7-1
KH2012:KH.L119.32.v1.A.nonSL8-1
KH2012:KH.L119.32.v1.A.nonSL9-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000001070
NCBI Reference Sequence XM_009862783.2
Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term Analysis Definition
Tubulin PRINTS Tubulin
Tubulin_FtsZ_GTPase Pfam Tubulin/FtsZ, GTPase domain
Tubulin/FtsZ_C_sf Gene3D Tubulin/FtsZ, C-terminal domain superfamily
Tubulin_FtsZ_GTPase SMART Tubulin/FtsZ, GTPase domain
Tubulin/FtsZ_GTPase_sf SUPERFAMILY Tubulin/FtsZ, GTPase domain superfamily
Tubulin/FtsZ_2-layer-sand-dom SMART Tubulin/FtsZ, 2-layer sandwich domain
Tub_FtsZ_C SUPERFAMILY Tubulin/FtsZ, C-terminal
Tubulin/FtsZ_2-layer-sand-dom Pfam Tubulin/FtsZ, 2-layer sandwich domain
Tubulin_C Gene3D Tubulin, C-terminal
Tubulin/FtsZ_GTPase_sf Gene3D Tubulin/FtsZ, GTPase domain superfamily
Alpha_tubulin PRINTS Alpha tubulin
Tubulin_CS ProSitePatterns Tubulin, conserved site
Tubulin PANTHER Tubulin

GOSlim

20 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
GTPase activity Orthology molecular function
structural molecule activity Orthology molecular function
protein binding Orthology molecular function
GTP binding Orthology molecular function
nucleus Orthology cellular component
cytoplasm Orthology cellular component
cytosol Blast cellular component
cytoskeleton Orthology cellular component
microtubule Orthology cellular component
microtubule-based process Orthology biological process
microtubule cytoskeleton Orthology cellular component
myelin sheath Blast cellular component
membrane raft Blast cellular component
extracellular exosome Blast cellular component
organelle organization Orthology biological process
cytoplasmic part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
macromolecular complex Blast cellular component
endosome Blast cellular component

GO (Orthology)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
GTPase activity Hs molecular function
structural constituent of cytoskeleton Hs molecular function
protein binding Hs molecular function
GTP binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
cytoskeleton Hs cellular component
microtubule Hs cellular component
cytoskeleton organization Hs biological process
microtubule-based process Hs biological process
microtubule cytoskeleton Hs cellular component

GO (Blast)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 929 0.0
GTPase activity Hs molecular function 929 0.0
structural molecule activity Hs molecular function 927 0.0
structural constituent of cytoskeleton Hs molecular function 929 0.0
protein binding Hs molecular function 929 0.0
GTP binding Hs molecular function 929 0.0
nucleus Hs cellular component 929 0.0
cytoplasm Hs cellular component 929 0.0
cytosol Hs cellular component 927 0.0
cytoskeleton Hs cellular component 929 0.0
microtubule Hs cellular component 929 0.0
cytoplasmic microtubule Hs cellular component 927 0.0
microtubule cytoskeleton Hs cellular component 929 0.0
protein domain specific binding Hs molecular function 927 0.0
cytoplasmic ribonucleoprotein granule Hs cellular component 927 0.0
myelin sheath Hs cellular component 927 0.0
membrane raft Hs cellular component 927 0.0
recycling endosome Hs cellular component 927 0.0
extracellular exosome Hs cellular component 927 0.0

GO (InterProScan)

5 results

GO Term Analysis Type e-value
GTPase activity SMART molecular function 3.0E-84
structural constituent of cytoskeleton PRINTS molecular function 6.8E-121
GTP binding PRINTS molecular function 6.8E-121
microtubule PANTHER cellular component 0.0
microtubule-based process PANTHER biological process 0.0

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