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GENE CARD

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Gene Card

Best human hits

FOXN1; FOXN2; FOXN3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010993

Gene Model ID

KH2012:KH.L13.24

Location

KhL13:156812..164740

Transcript Models and Sequences

  KH2012:KH.L13.24.v1.A.SL1-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000001109
NCBI Reference Sequence NM_001078248.1
NCBI Reference Sequence XM_018815207.1
Collections

Gateway full ORF

2 results

cien92758

Plate: VES84_F20

cima82217

Plate: VES56_K11

Gene collection 1 (N. Satoh)

3 results

citb2p24

Plate: R1CiGC28j22

cieg025p04

Plate: R1CiGC19n21

cieg098e16

Plate: R1CiGC40j12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

3 results

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
Fork_head_dom SMART Fork head domain
Fork_head_dom PRINTS Fork head domain
Fork_head_dom CDD Fork head domain
Fork_head_dom ProSiteProfiles Fork head domain
Fork_head_dom Pfam Fork head domain
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
TF_fork_head_CS_2 ProSitePatterns Fork head domain conserved site 2

GOSlim

15 results

GO Term Annotation Origin Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
protein C-terminus binding Blast molecular function
cell differentiation Orthology biological process
intracellular membrane-bounded organelle Orthology cellular component
sequence-specific DNA binding Orthology molecular function
positive regulation of transcription, DNA-templated Orthology biological process
animal organ development Orthology biological process

GO (Orthology)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
cell differentiation Hs biological process
skeletal muscle cell differentiation Hs biological process
intracellular membrane-bounded organelle Hs cellular component
sequence-specific DNA binding Hs molecular function
positive regulation of transcription, DNA-templated Hs biological process

GO (Blast)

9 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 190 8.46e-53
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 108 2.59e-24
DNA binding Hs molecular function 190 8.46e-53
transcription factor activity, sequence-specific DNA binding Hs molecular function 190 8.46e-53
protein binding Hs molecular function 190 8.46e-53
nucleus Hs cellular component 190 8.46e-53
protein C-terminus binding Hs molecular function 190 8.46e-53
intracellular membrane-bounded organelle Hs cellular component 165 2.31e-44
sequence-specific DNA binding Hs molecular function 190 8.46e-53

GO (InterProScan)

3 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding SMART molecular function 4.0E-45
regulation of transcription, DNA-templated SMART biological process 4.0E-45
sequence-specific DNA binding SMART molecular function 4.0E-45

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