Aniseed - Gene card

Gene Card

Best human hits

RPS8

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011073

Gene Model ID

KH2012:KH.L133.9

Location

KhL133:131..1924

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000006306
NCBI Reference Sequence	XM_002129645.4

Collections

Gateway full ORF

7 results

Gene collection 1 (N. Satoh)

4 results

ciad026j05

Plate: R1CiGC03i24

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Ribosomal_S8e_CS	ProSitePatterns	Ribosomal protein S8e, conserved site
Ribosomal_S8e	TIGRFAM	Ribosomal protein S8e
Ribosomal_S8e/biogenesis_NSA2	Pfam	Ribosomal protein S8e/ribosomal biogenesis NSA2
Ribosomal_S8e	PANTHER	Ribosomal protein S8e

GOSlim

18 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
focal adhesion	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
membrane	Orthology	cellular component
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component

GO (Orthology)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Hs	biological process
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
focal adhesion	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
membrane	Hs	cellular component
cytosolic small ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
extracellular exosome	Hs	cellular component

GO (Blast)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	320	1.20e-112
structural constituent of ribosome	Hs	molecular function	320	1.20e-112
protein binding	Hs	molecular function	320	1.20e-112
intracellular	Hs	cellular component	320	1.20e-112
nucleus	Hs	cellular component	320	1.20e-112
nucleoplasm	Hs	cellular component	320	1.20e-112
cytoplasm	Hs	cellular component	320	1.20e-112
endoplasmic reticulum	Hs	cellular component	320	1.20e-112
cytosol	Hs	cellular component	320	1.20e-112
ribosome	Hs	cellular component	320	1.20e-112
focal adhesion	Hs	cellular component	320	1.20e-112
membrane	Hs	cellular component	320	1.20e-112
cytosolic small ribosomal subunit	Hs	cellular component	320	1.20e-112
intracellular ribonucleoprotein complex	Hs	cellular component	320	1.20e-112
extracellular exosome	Hs	cellular component	320	1.20e-112

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	PANTHER	molecular function	1.6E-108
intracellular	PANTHER	cellular component	1.6E-108
ribosome	PANTHER	cellular component	1.6E-108
translation	PANTHER	biological process	1.6E-108

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences

External database links

Gateway full ORF

cien27638

cima818532

cima8101538

cien121910

cien184487

cima894134

cien158379

Gene collection 1 (N. Satoh)

ciad013b23

cieg020e22

ciad017o19

ciad026j05

Regulatory Regions

InterPro

GOSlim

GO (Orthology)

GO (Blast)

GO (InterProScan)