Aniseed - Gene card

Gene Card

Best human hits

PAF1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011084

Gene Model ID

KH2012:KH.L134.2

Location

KhL134:202555..208727

Transcript Models and Sequences

KH2012:KH.L134.2.v1.A.ND1-1
KH2012:KH.L134.2.v1.A.nonSL2-1
KH2012:KH.L134.2.v1.A.nonSL3-1
KH2012:KH.L134.2.v1.A.nonSL4-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000015908

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb13a5

Plate: R1CiGC30d09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term	Analysis	Definition
RNA_pol_II-assoc_Paf1	Pfam	RNA polymerase II associated factor Paf1
RNA_pol_II-assoc_Paf1	PANTHER	RNA polymerase II associated factor Paf1

GOSlim

31 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
chromatin binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
membrane	Orthology	cellular component
protein ubiquitination	Orthology	biological process
cell junction	Orthology	cellular component
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
enzyme binding	Orthology	molecular function
mRNA processing	Orthology	biological process
organelle organization	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
cell-cell signaling	Orthology	biological process
cellular protein modification process	Orthology	biological process
DNA binding	Orthology	molecular function
nucleoplasm part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
developmental process	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
protein localization to organelle	Orthology	biological process
immune system process	Orthology	biological process
animal organ development	Orthology	biological process
cell differentiation	Orthology	biological process
response to lipopolysaccharide	Orthology	biological process
cellular response to organic substance	Orthology	biological process
cell cycle G1/S phase transition	Orthology	biological process

GO (Orthology)

30 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
RNA polymerase II core binding	Hs	molecular function
chromatin binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
transcription elongation from RNA polymerase II promoter	Hs	biological process
mRNA polyadenylation	Hs	biological process
histone monoubiquitination	Hs	biological process
membrane	Hs	cellular component
Wnt signaling pathway	Hs	biological process
protein ubiquitination	Hs	biological process
histone modification	Hs	biological process
nucleosome positioning	Hs	biological process
Cdc73/Paf1 complex	Hs	cellular component
stem cell population maintenance	Hs	biological process
cell junction	Hs	cellular component
positive regulation of histone methylation	Hs	biological process
positive regulation of mRNA 3'-end processing	Hs	biological process
positive regulation of transcription elongation from RNA polymerase II promoter	Hs	biological process
histone H2B ubiquitination	Hs	biological process
protein localization to nucleus	Hs	biological process
negative regulation of myeloid cell differentiation	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
cellular response to lipopolysaccharide	Hs	biological process
positive regulation of cell cycle G1/S phase transition	Hs	biological process

GO (Blast)

9 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core binding	Hs	molecular function	201	9.33e-63
chromatin binding	Hs	molecular function	201	9.33e-63
protein binding	Hs	molecular function	201	9.33e-63
nucleus	Hs	cellular component	201	9.33e-63
nucleoplasm	Hs	cellular component	201	9.33e-63
cytoplasm	Hs	cellular component	201	9.33e-63
membrane	Hs	cellular component	201	9.33e-63
Cdc73/Paf1 complex	Hs	cellular component	201	9.33e-63
cell junction	Hs	cellular component	201	9.33e-63

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
transcription elongation from RNA polymerase II promoter	PANTHER	biological process	3.8E-57
histone modification	PANTHER	biological process	3.8E-57
Cdc73/Paf1 complex	PANTHER	cellular component	3.8E-57