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Gene Card

Best human hits

SRGAP1; SRGAP2; SRGAP3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011486

Gene Model ID

KH2012:KH.L153.37

Location

KhL153:709066..741831

Transcript Models and Sequences

  KH2012:KH.L153.37.v1.A.SL1-1
KH2012:KH.L153.37.v2.A.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XM_009863030.2
Collections

Gateway full ORF

2 results

cien34765

Plate: VES75_P20

cien195793

Plate: VES100_G15

Gene collection 1 (N. Satoh)

2 results

cicl002o16

Plate: R1CiGC08o10

cieg004g09

Plate: R1CiGC16e09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

14 results

IPR Term Analysis Definition
AH/BAR_dom_sf Gene3D AH/BAR domain superfamily
SH3-like_dom_sf SUPERFAMILY SH3-like domain superfamily
RhoGAP_dom ProSiteProfiles Rho GTPase-activating protein domain
FCH_dom SMART FCH domain
SH3_domain Pfam SH3 domain
Rho_GTPase_activation_prot SUPERFAMILY Rho GTPase activation protein
SH3_domain SMART SH3 domain
FCH_dom Pfam FCH domain
RhoGAP_dom Pfam Rho GTPase-activating protein domain
RhoGAP_dom SMART Rho GTPase-activating protein domain
SH3_domain ProSiteProfiles SH3 domain
Rho_GTPase_activation_prot Gene3D Rho GTPase activation protein
F_BAR ProSiteProfiles F-BAR domain
AH/BAR_dom_sf SUPERFAMILY AH/BAR domain superfamily

GOSlim

42 results

GO Term Annotation Origin Type
GTPase activator activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
plasma membrane Orthology cellular component
signal transduction Orthology biological process
nervous system development Orthology biological process
membrane Orthology cellular component
lamellipodium Orthology cellular component
cell junction Orthology cellular component
cytoplasmic vesicle Orthology cellular component
identical protein binding Orthology molecular function
protein homodimerization activity Orthology molecular function
cell projection Orthology cellular component
positive regulation of GTPase activity Orthology biological process
synapse Orthology cellular component
postsynaptic membrane Orthology cellular component
neuron projection morphogenesis Orthology biological process
Golgi apparatus Orthology cellular component
microtubule Orthology cellular component
positive regulation of signal transduction Orthology biological process
protein heterodimerization activity Orthology molecular function
organelle Orthology cellular component
postsynapse Orthology cellular component
neuron part Orthology cellular component
cell migration Orthology biological process
cell adhesion Orthology biological process
cell morphogenesis involved in differentiation Orthology biological process
cell projection assembly Orthology biological process
enzyme binding Orthology molecular function
cellular process Orthology biological process
small GTPase mediated signal transduction Orthology biological process
regulation of signal transduction Orthology biological process
neuron projection development Orthology biological process
cell development Orthology biological process
generation of neurons Orthology biological process
organelle organization Orthology biological process
cell projection part Orthology cellular component
axon Orthology cellular component
axonogenesis Orthology biological process

GO (Orthology)

43 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
GTPase activator activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
plasma membrane Hs cellular component
signal transduction Hs biological process
nervous system development Hs biological process
postsynaptic density Hs cellular component
membrane Hs cellular component
lamellipodium Hs cellular component
cell junction Hs cellular component
negative regulation of cell migration Hs biological process
cytoplasmic vesicle Hs cellular component
substrate adhesion-dependent cell spreading Hs biological process
identical protein binding Hs molecular function
protein homodimerization activity Hs molecular function
cell projection Hs cellular component
dendritic spine Hs cellular component
positive regulation of GTPase activity Hs biological process
dendritic spine head Hs cellular component
synapse Hs cellular component
postsynaptic membrane Hs cellular component
phagocytic vesicle Hs cellular component
filopodium assembly Hs biological process
Rac GTPase binding Hs molecular function
neuron projection morphogenesis Hs biological process
actin filament severing Hs biological process
regulation of small GTPase mediated signal transduction Hs biological process
dendritic spine development Hs biological process
negative regulation of neuron migration Hs biological process
SH3/SH2 adaptor activity Hs molecular function
Golgi apparatus Hs cellular component
microtubule Hs cellular component
cytoskeleton organization Hs biological process
Rho protein signal transduction Hs biological process
positive regulation of signal transduction Hs biological process
growth cone Hs cellular component
negative regulation of axon extension Hs biological process
protein heterodimerization activity Hs molecular function
negative regulation of filopodium assembly Hs biological process
positive regulation of neuron migration Hs biological process

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
GTPase activator activity Hs molecular function 649 0.0
protein binding Hs molecular function 649 0.0
nucleus Hs cellular component 596 0.0
nucleoplasm Hs cellular component 596 0.0
cytoplasm Hs cellular component 649 0.0
cytosol Hs cellular component 649 0.0
plasma membrane Hs cellular component 596 0.0
postsynaptic density Hs cellular component 596 0.0
membrane Hs cellular component 596 0.0
lamellipodium Hs cellular component 596 0.0
cell junction Hs cellular component 596 0.0
cytoplasmic vesicle Hs cellular component 596 0.0
identical protein binding Hs molecular function 596 0.0
protein homodimerization activity Hs molecular function 596 0.0
cell projection Hs cellular component 596 0.0
dendritic spine Hs cellular component 596 0.0
dendritic spine head Hs cellular component 596 0.0
synapse Hs cellular component 596 0.0
postsynaptic membrane Hs cellular component 596 0.0
phagocytic vesicle Hs cellular component 596 0.0
Rac GTPase binding Hs molecular function 649 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 1.58E-16
signal transduction SMART biological process 2.0E-56

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