Aniseed - Gene card

Gene Card

Best human hits

CAPRIN1; CAPRIN2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011614

Gene Model ID

KH2012:KH.L155.16

Location

KhL155:799..7383

Transcript Models and Sequences

KH2012:KH.L155.16.v1.R.ND1-1
KH2012:KH.L155.16.v2.A.nonSL4-1
KH2012:KH.L155.16.v2.A.nonSL5-1
KH2012:KH.L155.16.v2.A.nonSL6-1
KH2012:KH.L155.16.v2.A.nonSL7-1
KH2012:KH.L155.16.v2.A.SL2-1
KH2012:KH.L155.16.v2.A.SL3-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000009265
NCBI Reference Sequence	NM_001278956.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg019m10

Plate: R1CiGC18h19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

1 result

IPR Term	Analysis	Definition
Caprin	PANTHER	Caprin

GOSlim

24 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
receptor binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Orthology	cellular component
centrosome	Orthology	cellular component
cytosol	Orthology	cellular component
plasma membrane	Orthology	cellular component
integral component of plasma membrane	Orthology	cellular component
membrane	Orthology	cellular component
cell differentiation	Orthology	biological process
cell projection	Orthology	cellular component
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
metal ion binding	Orthology	molecular function
positive regulation of canonical Wnt signaling pathway	Orthology	biological process
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
macromolecular complex	Orthology	cellular component
negative regulation of gene expression	Orthology	biological process
cellular component organization	Orthology	biological process
protein phosphorylation	Orthology	biological process
cell morphogenesis involved in neuron differentiation	Orthology	biological process
neuron projection morphogenesis	Orthology	biological process

GO (Orthology)

27 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
P-body	Hs	cellular component
RNA binding	Hs	molecular function
receptor binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
centrosome	Hs	cellular component
cytosol	Hs	cellular component
plasma membrane	Hs	cellular component
integral component of plasma membrane	Hs	cellular component
cytoplasmic stress granule	Hs	cellular component
membrane	Hs	cellular component
negative regulation of translation	Hs	biological process
cell differentiation	Hs	biological process
negative regulation of cell growth	Hs	biological process
dendrite	Hs	cellular component
positive regulation of protein binding	Hs	biological process
positive regulation of peptidyl-serine phosphorylation	Hs	biological process
regulation of growth	Hs	biological process
cell projection	Hs	cellular component
receptor complex	Hs	cellular component
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
metal ion binding	Hs	molecular function
positive regulation of dendrite morphogenesis	Hs	biological process
positive regulation of dendritic spine morphogenesis	Hs	biological process
positive regulation of canonical Wnt signaling pathway	Hs	biological process

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
P-body	Hs	cellular component	149	1.31e-37
RNA binding	Hs	molecular function	149	1.31e-37
receptor binding	Hs	molecular function	138	1.05e-33
protein binding	Hs	molecular function	149	1.31e-37
nucleus	Hs	cellular component	138	1.05e-33
cytoplasm	Hs	cellular component	149	1.31e-37
mitochondrion	Hs	cellular component	138	1.05e-33
centrosome	Hs	cellular component	138	1.05e-33
cytosol	Hs	cellular component	149	1.31e-37
plasma membrane	Hs	cellular component	138	1.05e-33
integral component of plasma membrane	Hs	cellular component	149	1.31e-37
cytoplasmic stress granule	Hs	cellular component	149	1.31e-37
membrane	Hs	cellular component	149	1.31e-37
dendrite	Hs	cellular component	149	1.31e-37
cell projection	Hs	cellular component	149	1.31e-37
receptor complex	Hs	cellular component	138	1.05e-33
metal ion binding	Hs	molecular function	138	1.05e-33

GO (InterProScan)