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Gene Card

Best human hits

SAFB; SAFB2; SLTM

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011740

Gene Model ID

KH2012:KH.L17.6

Location

KhL17:31994..37756

Transcript Models and Sequences

  KH2012:KH.L17.6.v1.A.ND3-1
KH2012:KH.L17.6.v2.A.ND1-1
KH2012:KH.L17.6.v3.A.ND2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000023892
NCBI Reference Sequence XM_018815562.1
Collections

Gateway full ORF

2 results

cien196233

Plate: VES100_B18

cien222840

Plate: VES104_P19

Gene collection 1 (N. Satoh)

2 results

cilv003b17

Plate: R1CiGC25g07

cieg034n19

Plate: R1CiGC21m05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom ProSiteProfiles RNA recognition motif domain
RRM_dom SMART RNA recognition motif domain
RRM_dom Pfam RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily

GOSlim

28 results

GO Term Annotation Origin Type
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
double-stranded DNA binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
apoptotic process Orthology biological process
nuclear body Orthology cellular component
identical protein binding Orthology molecular function
intracellular membrane-bounded organelle Orthology cellular component
sequence-specific DNA binding Orthology molecular function
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
extracellular exosome Orthology cellular component
transcription regulatory region DNA binding Orthology molecular function
organelle organization Orthology biological process
signal transduction Orthology biological process
response to lipid Orthology biological process
cellular response to organic substance Orthology biological process
metabolic process Orthology biological process
mRNA processing Orthology biological process
regulation of gene expression Orthology biological process
regulation of signal transduction Orthology biological process

GO (Orthology)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
core promoter binding Hs molecular function
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
chromatin binding Hs molecular function
double-stranded DNA binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
chromatin organization Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
apoptotic process Hs biological process
nuclear body Hs cellular component
intracellular estrogen receptor signaling pathway Hs biological process
growth Hs biological process
hormone metabolic process Hs biological process
identical protein binding Hs molecular function
intracellular membrane-bounded organelle Hs cellular component
sequence-specific DNA binding Hs molecular function
positive regulation of transcription from RNA polymerase II promoter Hs biological process
regulation of mRNA processing Hs biological process
regulation of androgen receptor signaling pathway Hs biological process
extracellular exosome Hs cellular component

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
core promoter binding Hs molecular function 130 8.17e-31
nucleic acid binding Hs molecular function 132 1.80e-31
DNA binding Hs molecular function 132 1.80e-31
chromatin binding Hs molecular function 130 8.17e-31
double-stranded DNA binding Hs molecular function 132 1.80e-31
RNA binding Hs molecular function 132 1.80e-31
protein binding Hs molecular function 132 1.80e-31
nucleus Hs cellular component 132 1.80e-31
nucleoplasm Hs cellular component 132 1.80e-31
cytoplasm Hs cellular component 132 1.80e-31
nuclear body Hs cellular component 132 1.80e-31
identical protein binding Hs molecular function 132 1.80e-31
intracellular membrane-bounded organelle Hs cellular component 132 1.80e-31
sequence-specific DNA binding Hs molecular function 132 1.80e-31
extracellular exosome Hs cellular component 132 1.80e-31

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 1.49E-21

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