Aniseed - Gene card

Gene Card

Best human hits

RIC1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011743

Gene Model ID

KH2012:KH.L170.1

Location

KhL170:369672..399801

Transcript Models and Sequences

KH2012:KH.L170.1.v1.B.ND1-1
KH2012:KH.L170.1.v2.A.ND2-2
KH2012:KH.L170.1.v3.A.ND2-1
KH2012:KH.L170.1.v4.A.SL3-2
KH2012:KH.L170.1.v5.A.SL3-1

External Database Gene Card

External database links

5 results

Database	Gene ID
ENSEMBL	ENSCING00000000363
ENSEMBL	ENSCING00000018748
ENSEMBL	ENSCING00000019141
ENSEMBL	ENSCING00000020848
NCBI Reference Sequence	XM_018815603.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

cigd010i18

Plate: R1CiGC41o15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
WD40/YVTN_repeat-like_dom_sf	Gene3D	WD40/YVTN repeat-like-containing domain superfamily
WD40_repeat_dom_sf	SUPERFAMILY	WD40-repeat-containing domain superfamily
Ribosome_control_1	Pfam	Ribosome control protein 1

GOSlim

12 results

GO Term	Annotation Origin	Type
Golgi membrane	Orthology	cellular component
protein binding	Orthology	molecular function
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
intracellular protein transport	Orthology	biological process
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
macromolecular complex	Orthology	cellular component
positive regulation of GTPase activity	Orthology	biological process
enzyme binding	Orthology	molecular function
molecular function regulator	Orthology	molecular function
Golgi apparatus part	Orthology	cellular component

GO (Orthology)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
Golgi membrane	Hs	cellular component
guanyl-nucleotide exchange factor activity	Hs	molecular function
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
intracellular protein transport	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
Rab guanyl-nucleotide exchange factor activity	Hs	molecular function
Rab GTPase binding	Hs	molecular function
trans-Golgi network membrane	Hs	cellular component
macromolecular complex	Hs	cellular component
RIC1-RGP1 guanyl-nucleotide exchange factor complex	Hs	cellular component
retrograde transport, endosome to Golgi	Hs	biological process
positive regulation of GTPase activity	Hs	biological process
negative regulation of cellular protein catabolic process	Hs	biological process

GO (Blast)