Aniseed - Gene card

Gene Card

Best human hits

STRBP; ZFR; ZFR2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011763

Gene Model ID

KH2012:KH.L170.28

Location

KhL170:99118..107536

Transcript Models and Sequences

External Database Gene Card

External database links

5 results

Database	Gene ID
ENSEMBL	ENSCING00000004862
NCBI Reference Sequence	XM_002130176.4
NCBI Reference Sequence	XM_018815596.1
NCBI Reference Sequence	XM_018815597.1
NCBI Reference Sequence	XR_001975163.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cilv020c06

Plate: R1CiGC26d08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
DZF_dom	Pfam	DZF domain
DZF_dom	ProSiteProfiles	DZF domain
Znf_C2H2_sf	SUPERFAMILY	Zinc finger C2H2 superfamily
dsRBD_dom	ProSiteProfiles	Double-stranded RNA-binding domain
dsRBD_dom	Pfam	Double-stranded RNA-binding domain
dsRBD_dom	SMART	Double-stranded RNA-binding domain
Znf_C2H2_type	ProSitePatterns	Zinc finger C2H2-type
DZF_dom	SMART	DZF domain

GOSlim

10 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
multicellular organism development	Orthology	biological process
zinc ion binding	Orthology	molecular function
microtubule cytoskeleton	Blast	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component

GO (Orthology)

9 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
chromosome	Hs	cellular component
cytoplasm	Hs	cellular component
multicellular organism development	Hs	biological process
zinc ion binding	Hs	molecular function

GO (Blast)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	378	6.37e-115
DNA binding	Hs	molecular function	378	6.37e-115
RNA binding	Hs	molecular function	378	6.37e-115
double-stranded RNA binding	Hs	molecular function	266	1.41e-77
single-stranded RNA binding	Hs	molecular function	266	1.41e-77
protein binding	Hs	molecular function	378	6.37e-115
nucleus	Hs	cellular component	378	6.37e-115
chromosome	Hs	cellular component	378	6.37e-115
cytoplasm	Hs	cellular component	378	6.37e-115
zinc ion binding	Hs	molecular function	378	6.37e-115
microtubule cytoskeleton	Hs	cellular component	266	1.41e-77

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	ProSitePatterns	molecular function