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GENE CARD

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Gene Card

Best human hits

PTPRQ; SDK1; USH2A

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011795

Gene Model ID

KH2012:KH.L170.57

Location

KhL170:442..9989

Transcript Models and Sequences

  KH2012:KH.L170.57.v1.B.ND1-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XM_018815593.1
Collections

Gene collection 1 (N. Satoh)

1 result

ciad036p11

Plate: R1CiGC04k21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
FN3_sf SUPERFAMILY Fibronectin type III superfamily
Ig-like_fold Gene3D Immunoglobulin-like fold
FN3_dom ProSiteProfiles Fibronectin type III
FN3_dom CDD Fibronectin type III
USH2A PANTHER Usherin
FN3_dom SMART Fibronectin type III
FN3_dom Pfam Fibronectin type III

GOSlim

29 results

GO Term Annotation Origin Type
protein binding Blast molecular function
extracellular region Blast cellular component
cytoplasm Blast cellular component
plasma membrane Blast cellular component
protein dephosphorylation Blast biological process
membrane Blast cellular component
integral component of membrane Blast cellular component
dephosphorylation Blast biological process
apical plasma membrane Blast cellular component
hydrolase activity Blast molecular function
cell junction Blast cellular component
identical protein binding Blast molecular function
protein homodimerization activity Blast molecular function
cell projection Blast cellular component
synapse Blast cellular component
extracellular exosome Blast cellular component
neuron part Blast cellular component
neuron projection Blast cellular component
cluster of actin-based cell projections Blast cellular component
macromolecular complex Blast cellular component
macromolecular complex binding Blast molecular function
extracellular region part Blast cellular component
cytoskeletal protein binding Blast molecular function
organelle part Blast cellular component
cell projection part Blast cellular component
plasma membrane region Blast cellular component
microtubule organizing center Blast cellular component
cell projection membrane Blast cellular component
cell leading edge Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
photoreceptor inner segment Hs cellular component 276 1.72e-79
stereocilia ankle link Hs cellular component 276 1.72e-79
stereocilia ankle link complex Hs cellular component 276 1.72e-79
phosphoprotein phosphatase activity Hs molecular function 87.4 1.44e-17
protein tyrosine phosphatase activity Hs molecular function 87.4 1.44e-17
protein binding Hs molecular function 276 1.72e-79
collagen binding Hs molecular function 276 1.72e-79
extracellular region Hs cellular component 276 1.72e-79
basement membrane Hs cellular component 276 1.72e-79
cytoplasm Hs cellular component 276 1.72e-79
plasma membrane Hs cellular component 276 1.72e-79
membrane Hs cellular component 276 1.72e-79
integral component of membrane Hs cellular component 276 1.72e-79
apical plasma membrane Hs cellular component 276 1.72e-79
hydrolase activity Hs molecular function 87.4 1.44e-17
phosphatase activity Hs molecular function 87.4 1.44e-17
myosin binding Hs molecular function 276 1.72e-79
cell junction Hs cellular component 79.0 5.91e-15
photoreceptor connecting cilium Hs cellular component 276 1.72e-79
stereocilium bundle Hs cellular component 276 1.72e-79
ciliary basal body Hs cellular component 276 1.72e-79
identical protein binding Hs molecular function 79.0 5.91e-15
protein homodimerization activity Hs molecular function 276 1.72e-79
cell projection Hs cellular component 276 1.72e-79
synapse Hs cellular component 79.0 5.91e-15
stereocilium membrane Hs cellular component 276 1.72e-79
extracellular exosome Hs cellular component 79.0 5.91e-15
periciliary membrane compartment Hs cellular component 276 1.72e-79
USH2 complex Hs cellular component 276 1.72e-79

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 2.07E-29

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