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GENE CARD

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Gene Card

Best human hits

HOXA1; HOXB1; HOXD1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011844

Gene Model ID

KH2012:KH.L171.16

Location

KhL171:182404..188436

Transcript Models and Sequences

  KH2012:KH.L171.16.v1.A.SL1-1
KH2012:KH.L171.16.v1.A.SL2-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000001273
NCBI Reference Sequence NM_001128861.1
NCBI Reference Sequence XM_018815614.1
Collections

Gene collection 1 (N. Satoh)

1 result

citb014p24

Plate: R1CiGC30b22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

9 results

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Homeobox_dom Pfam Homeobox domain
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_dom CDD Homeobox domain
Homeobox_metazoa PRINTS Homeobox domain, metazoa
Homeobox_dom SMART Homeobox domain
Homeobox_dom ProSiteProfiles Homeobox domain
Homeobox_CS ProSitePatterns Homeobox, conserved site

GOSlim

22 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Orthology molecular function
DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Blast cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
multicellular organism development Orthology biological process
sensory perception of sound Orthology biological process
anatomical structure morphogenesis Orthology biological process
identical protein binding Orthology molecular function
sequence-specific DNA binding Orthology molecular function
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
anatomical structure formation involved in morphogenesis Orthology biological process
animal organ development Orthology biological process
blood vessel morphogenesis Orthology biological process
nervous system process Orthology biological process
blood vessel development Orthology biological process

GO (Orthology)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
multicellular organism development Hs biological process
sensory perception of sound Hs biological process
optokinetic behavior Hs biological process
anatomical structure morphogenesis Hs biological process
identical protein binding Hs molecular function
sequence-specific DNA binding Hs molecular function
positive regulation of transcription from RNA polymerase II promoter Hs biological process
embryonic neurocranium morphogenesis Hs biological process
inner ear development Hs biological process
artery morphogenesis Hs biological process
regulation of behavior Hs biological process
cognition Hs biological process
neuromuscular process Hs biological process
artery development Hs biological process
semicircular canal formation Hs biological process

GO (Blast)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 145 6.87e-41
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 145 6.87e-41
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 158 1.79e-45
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 145 6.87e-41
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 158 1.79e-45
DNA binding Hs molecular function 158 1.79e-45
protein binding Hs molecular function 158 1.79e-45
nucleus Hs cellular component 158 1.79e-45
nucleoplasm Hs cellular component 133 5.05e-36
protein domain specific binding Hs molecular function 145 6.87e-41
identical protein binding Hs molecular function 158 1.79e-45
sequence-specific DNA binding Hs molecular function 158 1.79e-45

GO (InterProScan)

3 results

GO Term Analysis Type e-value
DNA binding SMART molecular function 1.3E-25
regulation of transcription, DNA-templated ProSitePatterns biological process
sequence-specific DNA binding ProSitePatterns molecular function

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