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Gene Card

Best human hits

EGR1; EGR2; EGR3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011866

Gene Model ID

KH2012:KH.L172.16

Location

KhL172:106274..108594

Transcript Models and Sequences

  KH2012:KH.L172.16.v1.A.ND1-1
KH2012:KH.L172.16.v2.A.ND1-2

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000022137
NCBI Reference Sequence NM_001128118.1
Collections

Gateway full ORF

1 result

cima839627

Plate: VES63_L15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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No Phylogeny Tree for this Gene.
Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Znf_C2H2_type ProSiteProfiles Zinc finger C2H2-type
Znf_C2H2_type ProSitePatterns Zinc finger C2H2-type
Znf_C2H2_sf SUPERFAMILY Zinc finger C2H2 superfamily
Znf_C2H2_type SMART Zinc finger C2H2-type

GOSlim

22 results

GO Term Annotation Origin Type
transcription regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
nucleic acid binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
zinc ion binding Blast molecular function
transferase activity Blast molecular function
ubiquitin protein ligase binding Blast molecular function
intracellular membrane-bounded organelle Blast cellular component
sequence-specific DNA binding Blast molecular function
transcription regulatory region DNA binding Blast molecular function
metal ion binding Blast molecular function
transcription factor binding Blast molecular function
double-stranded DNA binding Blast molecular function
enzyme binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

27 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transcription regulatory region sequence-specific DNA binding Hs molecular function 154 2.43e-40
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 154 2.43e-40
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 142 2.03e-36
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 154 2.43e-40
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 154 2.43e-40
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 154 2.43e-40
RNA polymerase II activating transcription factor binding Hs molecular function 142 2.03e-36
nucleic acid binding Hs molecular function 154 2.43e-40
DNA binding Hs molecular function 154 2.43e-40
chromatin binding Hs molecular function 142 2.03e-36
transcription factor activity, sequence-specific DNA binding Hs molecular function 154 2.43e-40
protein binding Hs molecular function 154 2.43e-40
nucleus Hs cellular component 154 2.43e-40
nucleoplasm Hs cellular component 154 2.43e-40
cytoplasm Hs cellular component 154 2.43e-40
zinc ion binding Hs molecular function 154 2.43e-40
double-stranded methylated DNA binding Hs molecular function 154 2.43e-40
transferase activity Hs molecular function 142 2.03e-36
ubiquitin protein ligase binding Hs molecular function 142 2.03e-36
histone acetyltransferase binding Hs molecular function 154 2.43e-40
intracellular membrane-bounded organelle Hs cellular component 142 2.03e-36
sequence-specific DNA binding Hs molecular function 154 2.43e-40
transcription regulatory region DNA binding Hs molecular function 154 2.43e-40
hemi-methylated DNA-binding Hs molecular function 154 2.43e-40
metal ion binding Hs molecular function 154 2.43e-40
HMG box domain binding Hs molecular function 142 2.03e-36
promoter-specific chromatin binding Hs molecular function 154 2.43e-40

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 4.8E-5

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