Aniseed - Gene card

Gene Card

Best human hits

NAA38; SNRPB; SNRPN

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011877

Gene Model ID

KH2012:KH.L172.26

Location

KhL172:52994..54367

Transcript Models and Sequences

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000016042

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

4 results

citb052i09

Plate: R1CiGC45h14

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
LSM_dom_euk/arc	SMART	LSM domain, eukaryotic/archaea-type
LSM_dom_sf	SUPERFAMILY	LSM domain superfamily
LSM_dom_euk/arc	Pfam	LSM domain, eukaryotic/archaea-type

GOSlim

17 results

GO Term	Annotation Origin	Type
mRNA splicing, via spliceosome	Orthology	biological process
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
mRNA processing	Orthology	biological process
RNA splicing	Orthology	biological process
extracellular exosome	Orthology	cellular component
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
transcription from RNA polymerase II promoter	Orthology	biological process
cellular protein modification process	Orthology	biological process
response to organic substance	Orthology	biological process
cytoplasmic part	Orthology	cellular component
intracellular transport	Orthology	biological process

GO (Orthology)

35 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
spliceosomal snRNP assembly	Hs	biological process
mRNA splicing, via spliceosome	Hs	biological process
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
U5 snRNP	Hs	cellular component
U7 snRNP	Hs	cellular component
U1 snRNP	Hs	cellular component
U2 snRNP	Hs	cellular component
U4 snRNP	Hs	cellular component
U12-type spliceosomal complex	Hs	cellular component
telomerase holoenzyme complex	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
termination of RNA polymerase II transcription	Hs	biological process
mRNA processing	Hs	biological process
protein methylation	Hs	biological process
RNA splicing	Hs	biological process
response to hormone	Hs	biological process
intracellular ribonucleoprotein complex	Hs	cellular component
small nuclear ribonucleoprotein complex	Hs	cellular component
U2 snRNA binding	Hs	molecular function
methylosome	Hs	cellular component
SMN-Sm protein complex	Hs	cellular component
U4/U6 x U5 tri-snRNP complex	Hs	cellular component
nuclear import	Hs	biological process
telomerase RNA binding	Hs	molecular function
extracellular exosome	Hs	cellular component
U2-type prespliceosome	Hs	cellular component
U2-type catalytic step 2 spliceosome	Hs	cellular component
catalytic step 2 spliceosome	Hs	cellular component
histone pre-mRNA 3'end processing complex	Hs	cellular component
histone pre-mRNA DCP binding	Hs	molecular function

GO (Blast)

29 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	136	9.17e-41
protein binding	Hs	molecular function	136	9.17e-41
nucleus	Hs	cellular component	136	9.17e-41
nucleoplasm	Hs	cellular component	136	9.17e-41
spliceosomal complex	Hs	cellular component	136	9.17e-41
U5 snRNP	Hs	cellular component	136	9.17e-41
U7 snRNP	Hs	cellular component	136	2.86e-40
U1 snRNP	Hs	cellular component	136	9.17e-41
U2 snRNP	Hs	cellular component	136	9.17e-41
U4 snRNP	Hs	cellular component	136	9.17e-41
U12-type spliceosomal complex	Hs	cellular component	136	2.86e-40
telomerase holoenzyme complex	Hs	cellular component	136	2.86e-40
cytoplasm	Hs	cellular component	136	9.17e-41
cytosol	Hs	cellular component	136	2.86e-40
polysome	Hs	cellular component	41.2	4.62e-05
intracellular ribonucleoprotein complex	Hs	cellular component	136	9.17e-41
small nuclear ribonucleoprotein complex	Hs	cellular component	136	9.17e-41
U2 snRNA binding	Hs	molecular function	136	2.86e-40
NatC complex	Hs	cellular component	41.2	4.62e-05
methylosome	Hs	cellular component	136	2.86e-40
SMN-Sm protein complex	Hs	cellular component	136	2.86e-40
U4/U6 x U5 tri-snRNP complex	Hs	cellular component	136	9.17e-41
telomerase RNA binding	Hs	molecular function	136	2.86e-40
extracellular exosome	Hs	cellular component	136	2.86e-40
U2-type prespliceosome	Hs	cellular component	136	9.17e-41
U2-type catalytic step 2 spliceosome	Hs	cellular component	136	2.86e-40
catalytic step 2 spliceosome	Hs	cellular component	136	9.17e-41
histone pre-mRNA 3'end processing complex	Hs	cellular component	136	2.86e-40
histone pre-mRNA DCP binding	Hs	molecular function	136	2.86e-40

GO (InterProScan)