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Gene Card

Best human hits

CTCF; CTCFL; ZNF501

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011897

Gene Model ID

KH2012:KH.L173.5

Location

KhL173:44887..51480

Transcript Models and Sequences

  KH2012:KH.L173.5.v1.A.nonSL11-1
KH2012:KH.L173.5.v1.A.nonSL13-1
KH2012:KH.L173.5.v1.A.SL1-1
KH2012:KH.L173.5.v2.A.nonSL11-1
KH2012:KH.L173.5.v2.A.nonSL13-1
KH2012:KH.L173.5.v2.A.SL1-1
KH2012:KH.L173.5.v3.A.ND2-1
KH2012:KH.L173.5.v3.A.nonSL10-1
KH2012:KH.L173.5.v3.A.nonSL12-1
KH2012:KH.L173.5.v3.A.nonSL3-1
KH2012:KH.L173.5.v3.A.nonSL4-1
KH2012:KH.L173.5.v3.A.nonSL5-1
KH2012:KH.L173.5.v3.A.nonSL6-1
KH2012:KH.L173.5.v3.A.nonSL7-1
KH2012:KH.L173.5.v3.A.nonSL8-1
KH2012:KH.L173.5.v3.A.nonSL9-1
KH2012:KH.L173.5.v4.A.ND2-1
KH2012:KH.L173.5.v4.A.nonSL10-1
KH2012:KH.L173.5.v4.A.nonSL12-1
KH2012:KH.L173.5.v4.A.nonSL3-1
KH2012:KH.L173.5.v4.A.nonSL4-1
KH2012:KH.L173.5.v4.A.nonSL5-1
KH2012:KH.L173.5.v4.A.nonSL6-1
KH2012:KH.L173.5.v4.A.nonSL7-1
KH2012:KH.L173.5.v4.A.nonSL8-1
KH2012:KH.L173.5.v4.A.nonSL9-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000006765
Collections

Gateway full ORF

2 results

cima820982

Plate: VES60_K01

cien200196

Plate: VES101_P09

Gene collection 1 (N. Satoh)

1 result

citb042m20

Plate: R1CiGC33m19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Znf_C2H2_type ProSiteProfiles Zinc finger C2H2-type
Znf_C2H2_type ProSitePatterns Zinc finger C2H2-type
Znf_C2H2_sf SUPERFAMILY Zinc finger C2H2 superfamily
Znf_C2H2_type SMART Zinc finger C2H2-type

GOSlim

19 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
nucleic acid binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
transcription corepressor activity Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
nucleolus Blast cellular component
cytoplasm Blast cellular component
zinc ion binding Blast molecular function
sequence-specific DNA binding Blast molecular function
transcription regulatory region DNA binding Blast molecular function
metal ion binding Blast molecular function
intracellular organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
chromosome, centromeric region Hs cellular component 285 7.81e-88
condensed chromosome Hs cellular component 285 7.81e-88
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 285 7.81e-88
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 285 7.81e-88
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 275 2.49e-84
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 285 7.81e-88
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 285 7.81e-88
nucleic acid binding Hs molecular function 285 7.81e-88
DNA binding Hs molecular function 285 7.81e-88
chromatin binding Hs molecular function 285 7.81e-88
transcription factor activity, sequence-specific DNA binding Hs molecular function 285 7.81e-88
transcription corepressor activity Hs molecular function 285 7.81e-88
protein binding Hs molecular function 285 7.81e-88
nucleus Hs cellular component 285 7.81e-88
nucleoplasm Hs cellular component 285 7.81e-88
chromosome Hs cellular component 285 7.81e-88
nucleolus Hs cellular component 285 7.81e-88
cytoplasm Hs cellular component 275 2.49e-84
zinc ion binding Hs molecular function 285 7.81e-88
histone binding Hs molecular function 275 2.49e-84
chromatin insulator sequence binding Hs molecular function 285 7.81e-88
sequence-specific DNA binding Hs molecular function 285 7.81e-88
transcription regulatory region DNA binding Hs molecular function 285 7.81e-88
metal ion binding Hs molecular function 285 7.81e-88

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 6.3E-4

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