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Gene Card

Best human hits

GATA4; GATA5; GATA6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012060

Gene Model ID

KH2012:KH.L20.1

Location

KhL20:318046..328849

Transcript Models and Sequences

  KH2012:KH.L20.1.v1.A.SL2-1
KH2012:KH.L20.1.v1.A.SL3-1
KH2012:KH.L20.1.v1.R.ND1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000004437
NCBI Reference Sequence NM_001128863.1
Collections

Gateway full ORF

2 results

cien133863

Plate: VES91_N06

cien229100

Plate: VES105_F13

Gene collection 1 (N. Satoh)

2 results

ciad014g02

Plate: R1CiGC02d03

cieg021b07

Plate: R1CiGC18f16

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Znf_GATA PRINTS Zinc finger, GATA-type
Znf_GATA ProSiteProfiles Zinc finger, GATA-type
Znf_GATA Pfam Zinc finger, GATA-type
Znf_GATA SMART Zinc finger, GATA-type
Znf_NHR/GATA Gene3D Zinc finger, NHR/GATA-type
Znf_GATA ProSitePatterns Zinc finger, GATA-type

GOSlim

24 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
transcription coactivator activity Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
transcription factor binding Blast molecular function
zinc ion binding Blast molecular function
nuclear body Blast cellular component
protein kinase binding Blast molecular function
nuclear membrane Blast cellular component
sequence-specific DNA binding Blast molecular function
transcription regulatory region DNA binding Blast molecular function
metal ion binding Blast molecular function
transcription regulatory region sequence-specific DNA binding Blast molecular function
intracellular part Blast cellular component
macromolecular complex Blast cellular component
nuclear part Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 145 7.73e-38
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 142 1.01e-35
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 145 7.73e-38
transcription factor activity, RNA polymerase II transcription factor binding Hs molecular function 145 7.73e-38
RNA polymerase II transcription factor binding Hs molecular function 145 7.73e-38
RNA polymerase II repressing transcription factor binding Hs molecular function 142 1.01e-35
enhancer sequence-specific DNA binding Hs molecular function 145 7.73e-38
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 145 7.73e-38
DNA binding Hs molecular function 145 7.73e-38
chromatin binding Hs molecular function 145 7.73e-38
transcription factor activity, sequence-specific DNA binding Hs molecular function 145 7.73e-38
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 142 1.01e-35
transcription coactivator activity Hs molecular function 145 7.73e-38
protein binding Hs molecular function 145 7.73e-38
nucleus Hs cellular component 145 7.73e-38
nucleoplasm Hs cellular component 145 7.73e-38
transcription factor complex Hs cellular component 142 1.01e-35
transcription factor binding Hs molecular function 145 7.73e-38
zinc ion binding Hs molecular function 145 7.73e-38
nuclear body Hs cellular component 145 7.73e-38
protein kinase binding Hs molecular function 145 7.73e-38
nuclear membrane Hs cellular component 142 1.01e-35
activating transcription factor binding Hs molecular function 145 7.73e-38
sequence-specific DNA binding Hs molecular function 145 7.73e-38
transcription regulatory region DNA binding Hs molecular function 145 7.73e-38
metal ion binding Hs molecular function 145 7.73e-38
NFAT protein binding Hs molecular function 145 7.73e-38
co-SMAD binding Hs molecular function 145 7.73e-38
RNA polymerase II transcription factor complex Hs cellular component 145 7.73e-38

GO (InterProScan)

4 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding SMART molecular function 1.1E-22
regulation of transcription, DNA-templated Gene3D biological process 6.5E-27
zinc ion binding Gene3D molecular function 6.5E-27
sequence-specific DNA binding SMART molecular function 1.1E-22

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