- Gene 'Phmamm.CG.MTP2014.S7...' >
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Gene Card
Best human hits
LSM10; LSM2; LSM4
Unique Gene ID
Cirobu.g00012127
Gene Model ID
KH2012:KH.L22.13
Location
KhL22:103022..104833
External database links
2 results
| Database | Gene ID |
|---|---|
| ENSEMBL | ENSCING00000024984 |
| NCBI Reference Sequence | XR_717631.2 |
Gateway full ORF
4 results
cien35683
Plate: VES75_N23
cien187905
Plate: VES99_B08
cien203352
Plate: VES101_O21
cien214448
Plate: VES103_E15
Gene collection 1 (N. Satoh)
3 results
n/a
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You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
4 results
| IPR Term | Analysis | Definition |
|---|---|---|
| LSM_dom_euk/arc | SMART | LSM domain, eukaryotic/archaea-type |
| LSM_dom_euk/arc | Pfam | LSM domain, eukaryotic/archaea-type |
| LSM_dom_sf | SUPERFAMILY | LSM domain superfamily |
| APC_suCDC26 | Pfam | Anaphase-promoting complex, subunit CDC26 |
GOSlim
19 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| RNA binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Orthology | cellular component |
| cytosol | Blast | cellular component |
| mRNA processing | Orthology | biological process |
| RNA splicing | Orthology | biological process |
| membrane | Blast | cellular component |
| nuclear body | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
| neuron projection | Blast | cellular component |
| nuclear part | Orthology | cellular component |
| transcription from RNA polymerase II promoter | Orthology | biological process |
| G1/S transition of mitotic cell cycle | Orthology | biological process |
| cytoplasmic part | Blast | cellular component |
| intracellular non-membrane-bounded organelle | Blast | cellular component |
| enzyme binding | Blast | molecular function |
| mitotic cell cycle phase transition | InterProScan | biological process |
| proteolysis | InterProScan | biological process |
GO (Orthology)
14 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| U7 snRNP | Hs | cellular component |
| termination of RNA polymerase II transcription | Hs | biological process |
| mRNA processing | Hs | biological process |
| RNA splicing | Hs | biological process |
| Cajal body | Hs | cellular component |
| nuclear body | Hs | cellular component |
| intracellular ribonucleoprotein complex | Hs | cellular component |
| histone pre-mRNA DCP binding | Hs | molecular function |
| U7 snRNA binding | Hs | molecular function |
| positive regulation of G1/S transition of mitotic cell cycle | Hs | biological process |
GO (Blast)
25 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| P-body | Hs | cellular component | 47.8 | 1.23e-07 |
| RNA binding | Hs | molecular function | 64.3 | 1.74e-14 |
| protein binding | Hs | molecular function | 64.3 | 1.74e-14 |
| nucleus | Hs | cellular component | 64.3 | 1.74e-14 |
| nucleoplasm | Hs | cellular component | 64.3 | 1.74e-14 |
| spliceosomal complex | Hs | cellular component | 47.8 | 1.23e-07 |
| U7 snRNP | Hs | cellular component | 64.3 | 1.74e-14 |
| U6 snRNP | Hs | cellular component | 47.8 | 1.23e-07 |
| cytosol | Hs | cellular component | 47.8 | 1.23e-07 |
| Cajal body | Hs | cellular component | 64.3 | 1.74e-14 |
| membrane | Hs | cellular component | 47.8 | 1.23e-07 |
| nuclear body | Hs | cellular component | 64.3 | 1.74e-14 |
| U6 snRNA binding | Hs | molecular function | 47.8 | 1.23e-07 |
| Ral GTPase binding | Hs | molecular function | 38.1 | 1.37e-04 |
| intracellular ribonucleoprotein complex | Hs | cellular component | 64.3 | 1.74e-14 |
| macromolecular complex | Hs | cellular component | 47.8 | 1.23e-07 |
| PH domain binding | Hs | molecular function | 47.8 | 1.23e-07 |
| neuron projection | Hs | cellular component | 47.8 | 1.23e-07 |
| U4/U6 x U5 tri-snRNP complex | Hs | cellular component | 38.1 | 1.37e-04 |
| precatalytic spliceosome | Hs | cellular component | 38.1 | 1.37e-04 |
| catalytic step 2 spliceosome | Hs | cellular component | 38.1 | 1.37e-04 |
| histone pre-mRNA DCP binding | Hs | molecular function | 64.3 | 1.74e-14 |
| U7 snRNA binding | Hs | molecular function | 64.3 | 1.74e-14 |
| spliceosomal tri-snRNP complex | Hs | cellular component | 47.8 | 1.23e-07 |
| Lsm1-7-Pat1 complex | Hs | cellular component | 38.1 | 1.37e-04 |
GO (InterProScan)
3 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| anaphase-promoting complex | Pfam | cellular component | 8.1E-6 |
| regulation of mitotic metaphase/anaphase transition | Pfam | biological process | 8.1E-6 |
| anaphase-promoting complex-dependent catabolic process | Pfam | biological process | 8.1E-6 |
