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Gene Card

Best human hits

ABCA9; ABCE1; ABCF3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012253

Gene Model ID

KH2012:KH.L25.17

Location

KhL25:125419..128727

Transcript Models and Sequences

  KH2012:KH.L25.17.v1.A.SL1-1
KH2012:KH.L25.17.v1.A.SL2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000001553
NCBI Reference Sequence XM_002121928.4
Collections

Gateway full ORF

2 results

cien70052

Plate: VES81_F07

cien154795

Plate: VES94_M06

Gene collection 1 (N. Satoh)

1 result

cieg046p17

Plate: R1CiGC23i03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term Analysis Definition
ABC_transporter-like Pfam ABC transporter-like
4Fe4S_Fe-S-bd ProSiteProfiles 4Fe-4S ferredoxin-type, iron-sulphur binding domain
ABC_transporter_CS ProSitePatterns ABC transporter, conserved site
4Fe4S_Fe-S-bd Pfam 4Fe-4S ferredoxin-type, iron-sulphur binding domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
RNaseL-inhib_metal-bd_dom Pfam RNase L inhibitor RLI, possible metal-binding domain
ABC_transporter-like ProSiteProfiles ABC transporter-like
RLI1 PANTHER RLI1
RLI1 PRINTS RLI1
4Fe4S_Fe_S_CS ProSitePatterns 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
RLI_dom_1 CDD RLI, domain 1
AAA+_ATPase SMART AAA+ ATPase domain

GOSlim

23 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
iron ion binding Orthology molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
cytoplasm Orthology cellular component
mitochondrion Orthology cellular component
mitochondrial matrix Orthology cellular component
cytosol Orthology cellular component
translational initiation Orthology biological process
membrane Orthology cellular component
integral component of membrane Blast cellular component
intracellular membrane-bounded organelle Blast cellular component
transmembrane transport Blast biological process
intracellular protein transport Orthology biological process
cytoplasmic part Orthology cellular component
macromolecular complex Orthology cellular component
nucleoside-triphosphatase activity Orthology molecular function
macromolecular complex binding Orthology molecular function
cytokine-mediated signaling pathway Orthology biological process
regulation of signal transduction Orthology biological process
innate immune response Orthology biological process
enzyme regulator activity Orthology molecular function
cell adhesion molecule binding Blast molecular function

GO (Orthology)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
ribosomal subunit export from nucleus Hs biological process
nucleotide binding Hs molecular function
iron ion binding Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
cytoplasm Hs cellular component
mitochondrion Hs cellular component
mitochondrial matrix Hs cellular component
cytosol Hs cellular component
eukaryotic translation initiation factor 3 complex Hs cellular component
translational initiation Hs biological process
translational termination Hs biological process
membrane Hs cellular component
viral process Hs biological process
ATPase activity Hs molecular function
ribosomal small subunit binding Hs molecular function
regulation of type I interferon-mediated signaling pathway Hs biological process
endoribonuclease inhibitor activity Hs molecular function
negative regulation of endoribonuclease activity Hs biological process

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 1033 0.0
iron ion binding Hs molecular function 1033 0.0
protein binding Hs molecular function 1033 0.0
ATP binding Hs molecular function 1033 0.0
cytoplasm Hs cellular component 1033 0.0
mitochondrion Hs cellular component 1033 0.0
mitochondrial matrix Hs cellular component 1033 0.0
cytosol Hs cellular component 1033 0.0
eukaryotic translation initiation factor 3 complex Hs cellular component 1033 0.0
membrane Hs cellular component 1033 0.0
integral component of membrane Hs cellular component 62.0 7.76e-10
ATPase activity Hs molecular function 1033 0.0
ATPase activity, coupled to transmembrane movement of substances Hs molecular function 62.0 7.76e-10
ribosomal small subunit binding Hs molecular function 1033 0.0
intracellular membrane-bounded organelle Hs cellular component 62.0 7.76e-10
cadherin binding Hs molecular function 67.0 1.51e-11
endoribonuclease inhibitor activity Hs molecular function 1033 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
ATP binding Pfam molecular function 1.3E-18
ATPase activity Pfam molecular function 1.3E-18

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