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Gene Card

Best human hits

AUH; ECHDC2; ECHS1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012279

Gene Model ID

KH2012:KH.L3.1

Location

KhL3:84512..88406

Transcript Models and Sequences

  KH2012:KH.L3.1.v1.A.nonSL4-1
KH2012:KH.L3.1.v1.A.nonSL6-1
KH2012:KH.L3.1.v1.A.nonSL7-1
KH2012:KH.L3.1.v1.A.nonSL9-1
KH2012:KH.L3.1.v1.A.SL5-1
KH2012:KH.L3.1.v1.A.SL8-1
KH2012:KH.L3.1.v1.R.ND1-1
KH2012:KH.L3.1.v2.A.ND3-1
KH2012:KH.L3.1.v3.C.SL2-2
KH2012:KH.L3.1.v4.A.SL2-1
KH2012:KH.L3.1.v5.C.nonSL4-2
KH2012:KH.L3.1.v5.C.nonSL6-2
KH2012:KH.L3.1.v5.C.nonSL7-2
KH2012:KH.L3.1.v5.C.nonSL9-2
KH2012:KH.L3.1.v5.C.SL5-2
KH2012:KH.L3.1.v5.C.SL8-2
KH2012:KH.L3.1.v5.R.ND1-2
KH2012:KH.L3.1.v6.A.SL2-1
KH2012:KH.L3.1.v7.A.nonSL4-1
KH2012:KH.L3.1.v7.A.nonSL6-1
KH2012:KH.L3.1.v7.A.nonSL7-1
KH2012:KH.L3.1.v7.A.nonSL9-1
KH2012:KH.L3.1.v7.A.SL5-1
KH2012:KH.L3.1.v7.A.SL8-1
KH2012:KH.L3.1.v7.R.ND1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000002746
NCBI Reference Sequence XM_002120318.4
Collections

Gateway full ORF

2 results

cima823404

Plate: VES60_B12

cima897080

Plate: VES72_F03

Gene collection 1 (N. Satoh)

1 result

cicl041b06

Plate: R1CiGC12o16

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
ClpP/crotonase-like_dom_sf SUPERFAMILY ClpP/crotonase-like domain superfamily
enoyl-CoA_hydra_C Gene3D Enoyl-CoA hydratase, C-terminal
Enoyl-CoA_hydra/iso Pfam Enoyl-CoA hydratase/isomerase

GOSlim

10 results

GO Term Annotation Origin Type
RNA binding Orthology molecular function
catalytic activity Orthology molecular function
protein binding Blast molecular function
mitochondrion Orthology cellular component
mitochondrial matrix Orthology cellular component
metabolic process Orthology biological process
extracellular exosome Blast cellular component
organic substance metabolic process Orthology biological process
cellular metabolic process Orthology biological process
oxidation-reduction process Orthology biological process

GO (Orthology)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA binding Hs molecular function
mRNA 3'-UTR binding Hs molecular function
catalytic activity Hs molecular function
enoyl-CoA hydratase activity Hs molecular function
methylglutaconyl-CoA hydratase activity Hs molecular function
mitochondrion Hs cellular component
mitochondrial matrix Hs cellular component
lipid metabolic process Hs biological process
fatty acid metabolic process Hs biological process
fatty acid beta-oxidation Hs biological process
metabolic process Hs biological process
branched-chain amino acid catabolic process Hs biological process
lyase activity Hs molecular function
itaconyl-CoA hydratase activity Hs molecular function

GO (Blast)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA binding Hs molecular function 332 7.33e-114
mRNA 3'-UTR binding Hs molecular function 332 7.33e-114
catalytic activity Hs molecular function 332 7.33e-114
enoyl-CoA hydratase activity Hs molecular function 332 7.33e-114
methylglutaconyl-CoA hydratase activity Hs molecular function 332 7.33e-114
protein binding Hs molecular function 135 1.00e-37
mitochondrion Hs cellular component 332 7.33e-114
mitochondrial matrix Hs cellular component 332 7.33e-114
lyase activity Hs molecular function 332 7.33e-114
itaconyl-CoA hydratase activity Hs molecular function 332 7.33e-114
extracellular exosome Hs cellular component 135 1.00e-37

GO (InterProScan)

2 results

GO Term Analysis Type e-value
catalytic activity Pfam molecular function 8.9E-57
metabolic process Pfam biological process 8.9E-57

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