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GENE CARD

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Gene Card

Best human hits

ACTN1; ACTN4; DIXDC1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012414

Gene Model ID

KH2012:KH.L37.5

Location

KhL37:27084..32298

Transcript Models and Sequences

  KH2012:KH.L37.5.v1.A.SL1-1
KH2012:KH.L37.5.v1.A.SL2-1
KH2012:KH.L37.5.v2.A.SL3-1
KH2012:KH.L37.5.v3.A.SL4-1
KH2012:KH.L37.5.v3.A.SL5-1
KH2012:KH.L37.5.v4.A.ND6-1
KH2012:KH.L37.5.v4.A.SL4-1
KH2012:KH.L37.5.v4.A.SL5-1
KH2012:KH.L37.5.v5.A.SL1-1
KH2012:KH.L37.5.v5.A.SL2-1
KH2012:KH.L37.5.v6.A.SL3-1

External Database Gene Card

External database links

2 results

Database Gene ID
NCBI Reference Sequence XM_002129811.4
NCBI Reference Sequence XM_004227164.3
Collections

Gateway full ORF

2 results

cien135854

Plate: VES91_H13

cien155253

Plate: VES94_A09

Gene collection 1 (N. Satoh)

1 result

cieg009b10

Plate: R1CiGC16n22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term Analysis Definition
CH_dom_sf Gene3D CH domain superfamily
CH-domain SMART Calponin homology domain
CH-domain ProSiteProfiles Calponin homology domain
CH_dom_sf SUPERFAMILY CH domain superfamily
CH-domain Pfam Calponin homology domain
Actinin_actin-bd_CS ProSitePatterns Actinin-type actin-binding domain, conserved site
Dsh/Dvl-rel PANTHER Dishevelled-related protein
DIX Pfam DIX domain
Ubiquitin-like_domsf SUPERFAMILY Ubiquitin-like domain superfamily
DIX_dom_sf Gene3D DIX domain superfamily
DIX SMART DIX domain
DIX ProSiteProfiles DIX domain
CH-domain CDD Calponin homology domain

GOSlim

57 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
nucleoside binding Blast molecular function
RNA binding Blast molecular function
actin binding Orthology molecular function
integrin binding Blast molecular function
calcium ion binding Blast molecular function
protein binding Orthology molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
intracellular Blast cellular component
nucleus Blast cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
cytoskeleton Blast cellular component
plasma membrane Blast cellular component
brush border Blast cellular component
focal adhesion Orthology cellular component
cell cycle Orthology biological process
multicellular organism development Orthology biological process
membrane Blast cellular component
nuclear body Blast cellular component
cell junction Orthology cellular component
positive regulation of Wnt signaling pathway Orthology biological process
macromolecular complex Blast cellular component
protein homodimerization activity Blast molecular function
cell projection Blast cellular component
metal ion binding Blast molecular function
perinuclear region of cytoplasm Blast cellular component
actin filament binding Blast molecular function
extracellular exosome Blast cellular component
positive regulation of canonical Wnt signaling pathway Orthology biological process
cell surface receptor signaling pathway Orthology biological process
cell-cell signaling Orthology biological process
cell proliferation Orthology biological process
brain development Orthology biological process
organelle organization Orthology biological process
tubulin binding Orthology molecular function
cell development Orthology biological process
neuron differentiation Orthology biological process
microtubule-based process Orthology biological process
cytoskeletal part Blast cellular component
plasma membrane region Blast cellular component
cell leading edge Blast cellular component
adherens junction Blast cellular component
cytoskeletal protein binding Blast molecular function
cytoplasmic part Blast cellular component
organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
transcription coactivator activity Blast molecular function
intracellular organelle part Blast cellular component
cytoplasmic vesicle Blast cellular component
endomembrane system Blast cellular component
intracellular organelle lumen Blast cellular component
chromatin binding Blast molecular function
DNA binding Blast molecular function
receptor binding Blast molecular function
transcription factor binding Blast molecular function

GO (Orthology)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
actin binding Hs molecular function
protein binding Hs molecular function
cytoplasm Hs cellular component
cytosol Hs cellular component
focal adhesion Hs cellular component
cell cycle Hs biological process
multicellular organism development Hs biological process
Wnt signaling pathway Hs biological process
protein domain specific binding Hs molecular function
cell proliferation in forebrain Hs biological process
cell junction Hs cellular component
positive regulation of Wnt signaling pathway Hs biological process
regulation of actin cytoskeleton organization Hs biological process
gamma-tubulin binding Hs molecular function
negative regulation of neuron differentiation Hs biological process
canonical Wnt signaling pathway Hs biological process
regulation of microtubule cytoskeleton organization Hs biological process
positive regulation of canonical Wnt signaling pathway Hs biological process

GO (Blast)

47 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 70.5 1.08e-12
stress fiber Hs cellular component 72.8 2.03e-13
ruffle Hs cellular component 72.8 2.03e-13
nucleoside binding Hs molecular function 70.5 1.08e-12
RNA binding Hs molecular function 70.5 1.08e-12
double-stranded RNA binding Hs molecular function 72.8 2.03e-13
actin binding Hs molecular function 135 6.03e-34
integrin binding Hs molecular function 72.8 2.03e-13
calcium ion binding Hs molecular function 72.8 2.03e-13
protein binding Hs molecular function 135 6.03e-34
extracellular region Hs cellular component 72.8 2.03e-13
extracellular space Hs cellular component 72.8 2.03e-13
intracellular Hs cellular component 72.8 2.03e-13
nucleus Hs cellular component 70.5 1.08e-12
cytoplasm Hs cellular component 135 6.03e-34
cytosol Hs cellular component 135 6.03e-34
cytoskeleton Hs cellular component 72.8 2.03e-13
actin filament Hs cellular component 72.8 2.03e-13
plasma membrane Hs cellular component 72.8 2.03e-13
brush border Hs cellular component 72.8 2.03e-13
cell-cell junction Hs cellular component 72.8 2.03e-13
fascia adherens Hs cellular component 72.8 2.03e-13
focal adhesion Hs cellular component 135 6.03e-34
actin cytoskeleton Hs cellular component 70.5 1.08e-12
membrane Hs cellular component 72.8 2.03e-13
nuclear body Hs cellular component 70.5 1.08e-12
vinculin binding Hs molecular function 72.8 2.03e-13
protein domain specific binding Hs molecular function 135 6.03e-34
sarcomere Hs cellular component 72.8 2.03e-13
Z disc Hs cellular component 72.8 2.03e-13
cell junction Hs cellular component 135 6.03e-34
ligand-dependent nuclear receptor transcription coactivator activity Hs molecular function 72.8 2.03e-13
intracellular ribonucleoprotein complex Hs cellular component 70.5 1.08e-12
platelet alpha granule lumen Hs cellular component 72.8 2.03e-13
pseudopodium Hs cellular component 72.8 2.03e-13
chromatin DNA binding Hs molecular function 70.5 1.08e-12
macromolecular complex Hs cellular component 70.5 1.08e-12
nuclear hormone receptor binding Hs molecular function 70.5 1.08e-12
protein homodimerization activity Hs molecular function 72.8 2.03e-13
retinoic acid receptor binding Hs molecular function 70.5 1.08e-12
cell projection Hs cellular component 72.8 2.03e-13
gamma-tubulin binding Hs molecular function 135 6.03e-34
ion channel binding Hs molecular function 72.8 2.03e-13
metal ion binding Hs molecular function 72.8 2.03e-13
perinuclear region of cytoplasm Hs cellular component 70.5 1.08e-12
actin filament binding Hs molecular function 72.8 2.03e-13
extracellular exosome Hs cellular component 72.8 2.03e-13

GO (InterProScan)

2 results

GO Term Analysis Type e-value
protein binding Pfam molecular function 5.5E-15
Wnt signaling pathway PANTHER biological process 7.7E-151

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