Aniseed - Gene card

Gene Card

Best human hits

RPS6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012548

Gene Model ID

KH2012:KH.L40.23

Location

KhL40:74834..76945

Transcript Models and Sequences

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000001738
NCBI Reference Sequence	XM_009863355.2
NCBI Reference Sequence	XM_018815988.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

ciad002n07

Plate: R1CiGC01m21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Ribosomal_S6_euk	PIRSF	Ribosomal protein S6, eukaryotic
Ribosomal_S6e	Pfam	Ribosomal protein S6e
Ribosomal_S6e	SMART	Ribosomal protein S6e
Ribosomal_S6e_CS	ProSitePatterns	Ribosomal protein S6e, conserved site
Ribosomal_S6e	PANTHER	Ribosomal protein S6e

GOSlim

33 results

GO Term	Annotation Origin	Type
G1/S transition of mitotic cell cycle	Orthology	biological process
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
membrane	Orthology	cellular component
protein kinase binding	Orthology	molecular function
positive regulation of apoptotic process	Orthology	biological process
negative regulation of apoptotic process	Orthology	biological process
cell body	Orthology	cellular component
perinuclear region of cytoplasm	Orthology	cellular component
macromolecular complex	Orthology	cellular component
RNA processing	Orthology	biological process
anatomical structure formation involved in morphogenesis	Orthology	biological process
multicellular organism development	Orthology	biological process
intracellular organelle part	Orthology	cellular component
intracellular signal transduction	Orthology	biological process
immune system process	Orthology	biological process
animal organ development	Orthology	biological process
cell differentiation	Orthology	biological process
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
cell development	Orthology	biological process

GO (Orthology)

37 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
G1/S transition of mitotic cell cycle	Hs	biological process
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
mitotic cell cycle	Hs	biological process
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
polysome	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
mitotic cell cycle checkpoint	Hs	biological process
gastrulation	Hs	biological process
small ribosomal subunit	Hs	cellular component
membrane	Hs	cellular component
protein kinase binding	Hs	molecular function
cytosolic small ribosomal subunit	Hs	cellular component
dendrite	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
TOR signaling	Hs	biological process
T cell differentiation in thymus	Hs	biological process
cytoplasmic ribonucleoprotein granule	Hs	cellular component
ribosomal small subunit biogenesis	Hs	biological process
glucose homeostasis	Hs	biological process
positive regulation of apoptotic process	Hs	biological process
negative regulation of apoptotic process	Hs	biological process
cell body	Hs	cellular component
perinuclear region of cytoplasm	Hs	cellular component
erythrocyte development	Hs	biological process

GO (Blast)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	379	1.47e-134
structural constituent of ribosome	Hs	molecular function	379	1.47e-134
protein binding	Hs	molecular function	379	1.47e-134
intracellular	Hs	cellular component	379	1.47e-134
nucleus	Hs	cellular component	379	1.47e-134
nucleoplasm	Hs	cellular component	379	1.47e-134
nucleolus	Hs	cellular component	379	1.47e-134
cytoplasm	Hs	cellular component	379	1.47e-134
endoplasmic reticulum	Hs	cellular component	379	1.47e-134
cytosol	Hs	cellular component	379	1.47e-134
ribosome	Hs	cellular component	379	1.47e-134
polysome	Hs	cellular component	379	1.47e-134
small ribosomal subunit	Hs	cellular component	379	1.47e-134
membrane	Hs	cellular component	379	1.47e-134
protein kinase binding	Hs	molecular function	379	1.47e-134
cytosolic small ribosomal subunit	Hs	cellular component	379	1.47e-134
dendrite	Hs	cellular component	379	1.47e-134
intracellular ribonucleoprotein complex	Hs	cellular component	379	1.47e-134
cytoplasmic ribonucleoprotein granule	Hs	cellular component	379	1.47e-134
cell body	Hs	cellular component	379	1.47e-134
perinuclear region of cytoplasm	Hs	cellular component	379	1.47e-134

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	PIRSF	molecular function	4.5E-124
intracellular	PANTHER	cellular component	2.3E-116
ribosome	PIRSF	cellular component	4.5E-124
translation	PIRSF	biological process	4.5E-124