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GENE CARD

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  1. Gene 'KH2012:KH.L41.26'

Gene Card

Best human hits

DR1; NFYB; POLE3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012577

Gene Model ID

KH2012:KH.L41.26

Location

KhL41:284870..287574

Transcript Models and Sequences

  KH2012:KH.L41.26.v3.A.SL2-2

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000001016
NCBI Reference Sequence NM_001100132.1
Collections

Gateway full ORF

2 results

cien149688

Plate: VES93_I16

cien171570

Plate: VES96_A19

Gene collection 1 (N. Satoh)

2 results

cieg017j07

Plate: R1CiGC18m19

cigd006l19

Plate: R1CiGC41m01

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
CBFA_NFYB_domain Pfam Transcription factor CBF/NF-Y/archaeal histone domain
Histone-fold SUPERFAMILY Histone-fold
Histone-fold Gene3D Histone-fold
Transcrpt_fac_NFYB/HAP3_CS ProSitePatterns Transcription factor, NFYB/HAP3, conserved site

GOSlim

24 results

GO Term Annotation Origin Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcription corepressor activity Blast molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription factor binding Orthology molecular function
transferase activity Blast molecular function
sequence-specific DNA binding Orthology molecular function
transcription regulatory region DNA binding Orthology molecular function
positive regulation of transcription, DNA-templated Orthology biological process
protein heterodimerization activity Orthology molecular function
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
transferase activity, transferring phosphorus-containing groups Blast molecular function
DNA metabolic process Blast biological process
nucleoplasm part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component

GO (Orthology)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
CCAAT-binding factor complex Hs cellular component
protein-DNA complex Hs cellular component
sequence-specific DNA binding Hs molecular function
transcription regulatory region DNA binding Hs molecular function
positive regulation of transcription, DNA-templated Hs biological process
protein heterodimerization activity Hs molecular function
repressing transcription factor binding Hs molecular function
RNA polymerase II transcription factor complex Hs cellular component

GO (Blast)

22 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 196 2.99e-64
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 196 2.99e-64
DNA binding Hs molecular function 196 2.99e-64
transcription factor activity, sequence-specific DNA binding Hs molecular function 196 2.99e-64
transcription corepressor activity Hs molecular function 69.3 4.52e-15
DNA-directed DNA polymerase activity Hs molecular function 72.4 1.89e-16
protein binding Hs molecular function 196 2.99e-64
nucleus Hs cellular component 196 2.99e-64
nucleoplasm Hs cellular component 196 2.99e-64
Ada2/Gcn5/Ada3 transcription activator complex Hs cellular component 72.4 1.89e-16
transcription factor binding Hs molecular function 69.3 4.52e-15
epsilon DNA polymerase complex Hs cellular component 72.4 1.89e-16
CCAAT-binding factor complex Hs cellular component 196 2.99e-64
transferase activity Hs molecular function 72.4 1.89e-16
nucleotidyltransferase activity Hs molecular function 72.4 1.89e-16
TBP-class protein binding Hs molecular function 69.3 4.52e-15
protein-DNA complex Hs cellular component 196 2.99e-64
sequence-specific DNA binding Hs molecular function 196 2.99e-64
transcription regulatory region DNA binding Hs molecular function 196 2.99e-64
protein heterodimerization activity Hs molecular function 196 2.99e-64
repressing transcription factor binding Hs molecular function 196 2.99e-64
RNA polymerase II transcription factor complex Hs cellular component 196 2.99e-64

GO (InterProScan)

4 results

GO Term Analysis Type e-value
nucleus ProSitePatterns cellular component
regulation of transcription, DNA-templated ProSitePatterns biological process
sequence-specific DNA binding ProSitePatterns molecular function
protein heterodimerization activity Gene3D molecular function 5.5E-42

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