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Gene Card

Best human hits

CNGA2; CNGB1; CNGB3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012642

Gene Model ID

KH2012:KH.L42.6

Location

KhL42:59362..62017

Transcript Models and Sequences

  KH2012:KH.L42.6.v1.A.ND1-1
KH2012:KH.L42.6.v1.A.nonSL2-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000020294
NCBI Reference Sequence XM_002125522.3
NCBI Reference Sequence XM_018816020.1
Collections

Gateway full ORF

2 results

cien170733

Plate: VES96_B17

cien206179

Plate: VES102_G07

Gene collection 1 (N. Satoh)

1 result

cign052h19

Plate: R1CiGC42j07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

1 results

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
cNMP-bd_CS ProSitePatterns Cyclic nucleotide-binding, conserved site
cNMP-bd-like SUPERFAMILY Cyclic nucleotide-binding-like
RmlC-like_jellyroll Gene3D RmlC-like jelly roll fold
cNMP-bd_dom SMART Cyclic nucleotide-binding domain
cNMP-bd_dom ProSiteProfiles Cyclic nucleotide-binding domain
cNMP-bd_dom CDD Cyclic nucleotide-binding domain
cNMP-bd_dom Pfam Cyclic nucleotide-binding domain

GOSlim

39 results

GO Term Annotation Origin Type
Golgi membrane Orthology cellular component
nucleotide binding Orthology molecular function
protein binding Orthology molecular function
calmodulin binding Blast molecular function
plasma membrane Orthology cellular component
integral component of plasma membrane Orthology cellular component
ion transport Orthology biological process
cation transport Orthology biological process
signal transduction Orthology biological process
visual perception Orthology biological process
membrane Orthology cellular component
integral component of membrane Orthology cellular component
protein localization to organelle Orthology biological process
response to stimulus Orthology biological process
transmembrane transport Orthology biological process
organelle part Orthology cellular component
cell projection part Orthology cellular component
neuron projection Orthology cellular component
macromolecular complex Orthology cellular component
metal ion transport Orthology biological process
monovalent inorganic cation transport Orthology biological process
sensory perception Orthology biological process
G-protein coupled receptor signaling pathway Orthology biological process
regulation of signal transduction Orthology biological process
anion binding Orthology molecular function
adenyl ribonucleotide binding Orthology molecular function
guanyl ribonucleotide binding Orthology molecular function
intracellular organelle part Orthology cellular component
whole membrane Orthology cellular component
cytoplasmic vesicle Orthology cellular component
bounding membrane of organelle Orthology cellular component
neuron development Orthology biological process
cellular component organization Orthology biological process
axon Orthology cellular component
synapse part Orthology cellular component
protein oligomerization Orthology biological process
cellular process Orthology biological process
cell Orthology cellular component
cell projection membrane Orthology cellular component

GO (Orthology)

40 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
Golgi membrane Hs cellular component
nucleotide binding Hs molecular function
photoreceptor outer segment Hs cellular component
retina homeostasis Hs biological process
intracellular cyclic nucleotide activated cation channel activity Hs molecular function
intracellular cAMP activated cation channel activity Hs molecular function
intracellular cGMP activated cation channel activity Hs molecular function
voltage-gated potassium channel activity Hs molecular function
protein binding Hs molecular function
plasma membrane Hs cellular component
integral component of plasma membrane Hs cellular component
ion transport Hs biological process
cation transport Hs biological process
signal transduction Hs biological process
visual perception Hs biological process
phototransduction Hs biological process
sensory perception of smell Hs biological process
ligand-gated ion channel activity Hs molecular function
membrane Hs cellular component
integral component of membrane Hs cellular component
rhodopsin mediated signaling pathway Hs biological process
intracellular cyclic nucleotide activated cation channel complex Hs cellular component
regulation of rhodopsin mediated signaling pathway Hs biological process
cAMP binding Hs molecular function
cGMP binding Hs molecular function
Golgi-associated vesicle membrane Hs cellular component
protein localization to organelle Hs biological process
photoreceptor cell outer segment organization Hs biological process
regulation of membrane potential Hs biological process
terminal bouton Hs cellular component
cyclic nucleotide-gated ion channel activity Hs molecular function
photoreceptor cell maintenance Hs biological process
response to stimulus Hs biological process
detection of light stimulus involved in visual perception Hs biological process
protein heterotetramerization Hs biological process
regulation of cytosolic calcium ion concentration Hs biological process
ciliary membrane Hs cellular component
potassium ion transmembrane transport Hs biological process
cation transmembrane transport Hs biological process
transmembrane transporter complex Hs cellular component

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
Golgi membrane Hs cellular component 476 1.03e-154
nucleotide binding Hs molecular function 476 1.03e-154
photoreceptor outer segment Hs cellular component 476 1.03e-154
ion channel activity Hs molecular function 325 6.89e-103
intracellular cyclic nucleotide activated cation channel activity Hs molecular function 476 1.03e-154
intracellular cAMP activated cation channel activity Hs molecular function 476 1.03e-154
intracellular cGMP activated cation channel activity Hs molecular function 476 1.03e-154
voltage-gated potassium channel activity Hs molecular function 476 1.03e-154
protein binding Hs molecular function 476 1.03e-154
calmodulin binding Hs molecular function 325 6.89e-103
plasma membrane Hs cellular component 476 1.03e-154
integral component of plasma membrane Hs cellular component 476 1.03e-154
ligand-gated ion channel activity Hs molecular function 476 1.03e-154
membrane Hs cellular component 476 1.03e-154
integral component of membrane Hs cellular component 476 1.03e-154
intracellular cyclic nucleotide activated cation channel complex Hs cellular component 476 1.03e-154
cAMP binding Hs molecular function 476 1.03e-154
cGMP binding Hs molecular function 476 1.03e-154
Golgi-associated vesicle membrane Hs cellular component 476 1.03e-154
terminal bouton Hs cellular component 476 1.03e-154
cyclic nucleotide-gated ion channel activity Hs molecular function 476 1.03e-154
ciliary membrane Hs cellular component 476 1.03e-154
transmembrane transporter complex Hs cellular component 476 1.03e-154

GO (InterProScan)

No result

GO Term Analysis Type e-value

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