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GENE CARD

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Gene Card

Best human hits

CD22; HSPG2; PXDN

Unique Gene ID

Cirobu.g00012757

Gene Model ID

KH2012:KH.L52.1

Location

KhL52:6900..14111

Transcript Models and Sequences

  KH2012:KH.L52.1.v1.A.SL1-1

External Database Gene Card

External database links

1 result

Collections

Gateway full ORF

3 results

cien93963

Plate: VES85_A01

cien129893

Plate: VES90_G16

cien145087

Plate: VES92_A23

Gene collection 1 (N. Satoh)

1 result

cieg001j15

Plate: R1CiGC15h09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Sushi_SCR_CCP_dom ProSiteProfiles Sushi/SCR/CCP domain
Ig_sub SMART Immunoglobulin subtype
Myelin_P0-rel PANTHER Myelin P0 protein-related
Ig-like_dom ProSiteProfiles Immunoglobulin-like domain
Ig-like_dom_sf SUPERFAMILY Immunoglobulin-like domain superfamily
Ig-like_fold Gene3D Immunoglobulin-like fold

GOSlim

29 results

GO Term Annotation Origin Type
calcium ion binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
endoplasmic reticulum Blast cellular component
plasma membrane Blast cellular component
focal adhesion Blast cellular component
protein C-terminus binding Blast molecular function
membrane Blast cellular component
integral component of membrane Blast cellular component
heme binding Blast molecular function
metal ion binding Blast molecular function
oxidation-reduction process Blast biological process
extracellular exosome Blast cellular component
catalytic activity Blast molecular function
receptor binding Blast molecular function
molecular function regulator Blast molecular function
cytokine-mediated signaling pathway Blast biological process
signaling receptor activity Blast molecular function
negative regulation of signal transduction Blast biological process
extracellular region part Blast cellular component
structural molecule activity Blast molecular function
Golgi apparatus part Blast cellular component
intracellular organelle lumen Blast cellular component
binding Blast molecular function
lysosome Blast cellular component
vacuolar part Blast cellular component
plasma membrane part Blast cellular component
macromolecular complex Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
peroxidase activity Hs molecular function 47.4 3.44e-05
interleukin-1 receptor antagonist activity Hs molecular function 47.4 3.44e-05
extracellular matrix structural constituent Hs molecular function 47.4 3.44e-05
calcium ion binding Hs molecular function 47.4 3.60e-05
protein binding Hs molecular function 50.4 3.57e-06
extracellular region Hs cellular component 47.4 3.44e-05
proteinaceous extracellular matrix Hs cellular component 47.4 3.44e-05
basement membrane Hs cellular component 47.4 3.60e-05
extracellular space Hs cellular component 47.4 3.44e-05
endoplasmic reticulum Hs cellular component 47.4 3.44e-05
Golgi lumen Hs cellular component 47.4 3.60e-05
plasma membrane Hs cellular component 50.4 3.57e-06
focal adhesion Hs cellular component 47.4 3.60e-05
protein C-terminus binding Hs molecular function 47.4 3.60e-05
membrane Hs cellular component 50.4 3.57e-06
integral component of membrane Hs cellular component 50.4 3.57e-06
oxidoreductase activity Hs molecular function 47.4 3.44e-05
heme binding Hs molecular function 47.4 3.44e-05
carbohydrate binding Hs molecular function 50.4 3.57e-06
extracellular matrix Hs cellular component 47.4 3.44e-05
lysosomal lumen Hs cellular component 47.4 3.60e-05
metal ion binding Hs molecular function 47.4 3.44e-05
low-density lipoprotein particle receptor binding Hs molecular function 47.4 3.60e-05
extracellular exosome Hs cellular component 50.4 3.57e-06
plasma membrane protein complex Hs cellular component 47.4 3.60e-05

GO (InterProScan)

1 result

GO Term Analysis Type e-value
membrane PANTHER cellular component 1.4E-161