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Gene Card

Best human hits

VPS28

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012871

Gene Model ID

KH2012:KH.L61.13

Location

KhL61:14198..15800

Transcript Models and Sequences

  KH2012:KH.L61.13.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000010116
NCBI Reference Sequence XM_002131060.4
Collections

Gateway full ORF

2 results

cima892683

Plate: VES71_K03

cien114506

Plate: VES88_P05

Gene collection 1 (N. Satoh)

1 result

cicl022n02

Plate: R1CiGC11k16

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
VPS28_C ProSiteProfiles Vacuolar protein sorting-associated, VPS28, C-terminal
VPS28_N_sf Gene3D VPS28, N-terminal domain superfamily
Vps28 Pfam Vacuolar protein sorting-associated Vps28
VPS28_C_sf SUPERFAMILY VPS28, C-terminal domain superfamily
Vps28 PANTHER Vacuolar protein sorting-associated Vps28
ESCRT_assembly_dom SUPERFAMILY ESCRT assembly domain
VPS28_C_sf Gene3D VPS28, C-terminal domain superfamily
VPS28_N ProSiteProfiles Vacuolar protein sorting-associated, VPS28, N-terminal
Vps28 PIRSF Vacuolar protein sorting-associated Vps28

GOSlim

21 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
cytoplasm Orthology cellular component
endosome Orthology cellular component
early endosome Orthology cellular component
cytosol Orthology cellular component
plasma membrane Orthology cellular component
protein transport Orthology biological process
membrane Orthology cellular component
extracellular exosome Orthology cellular component
membrane part Orthology cellular component
intracellular organelle part Orthology cellular component
whole membrane Orthology cellular component
bounding membrane of organelle Orthology cellular component
macromolecular complex Orthology cellular component
intracellular transport Orthology biological process
protein ubiquitination Orthology biological process
vacuole Orthology cellular component
proteolysis Orthology biological process
intracellular protein transport Orthology biological process
establishment of protein localization to organelle Orthology biological process
protein metabolic process Orthology biological process

GO (Orthology)

22 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
ESCRT I complex Hs cellular component
protein binding Hs molecular function
cytoplasm Hs cellular component
endosome Hs cellular component
early endosome Hs cellular component
cytosol Hs cellular component
plasma membrane Hs cellular component
endosome membrane Hs cellular component
protein transport Hs biological process
membrane Hs cellular component
endosomal transport Hs biological process
macroautophagy Hs biological process
negative regulation of protein ubiquitination Hs biological process
late endosome membrane Hs cellular component
endosome transport via multivesicular body sorting pathway Hs biological process
multivesicular body assembly Hs biological process
ubiquitin binding Hs molecular function
ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway Hs biological process
protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway Hs biological process
host cell Hs cellular component
positive regulation of protein catabolic process Hs biological process
extracellular exosome Hs cellular component

GO (Blast)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
ESCRT I complex Hs cellular component 243 3.99e-82
protein binding Hs molecular function 243 3.99e-82
cytoplasm Hs cellular component 243 3.99e-82
endosome Hs cellular component 243 3.99e-82
early endosome Hs cellular component 243 3.99e-82
cytosol Hs cellular component 243 3.99e-82
plasma membrane Hs cellular component 243 3.99e-82
endosome membrane Hs cellular component 243 3.99e-82
membrane Hs cellular component 243 3.99e-82
late endosome membrane Hs cellular component 243 3.99e-82
ubiquitin binding Hs molecular function 243 3.99e-82
host cell Hs cellular component 243 3.99e-82
extracellular exosome Hs cellular component 243 3.99e-82

GO (InterProScan)

2 results

GO Term Analysis Type e-value
ESCRT I complex PANTHER cellular component 7.2E-82
endosome transport via multivesicular body sorting pathway PANTHER biological process 7.2E-82

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