Login
Help

GENE CARD

Submit your Data

Gene Card

Best human hits

NID2; SNED1; TECTA

Unique Gene ID

Cirobu.g00012904

Gene Model ID

KH2012:KH.L63.27

Location

KhL63:140805..146811

Transcript Models and Sequences

  KH2012:KH.L63.27.v1.B.nonSL1-1

External Database Gene Card

External database links

2 results

Collections

Gene collection 1 (N. Satoh)

1 result

cilv018f17

Plate: R1CiGC26h15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

2 results

IPR Term Analysis Definition
NIDO_dom SMART NIDO domain
NIDO_dom Pfam NIDO domain

GOSlim

12 results

GO Term Annotation Origin Type
calcium ion binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
plasma membrane Blast cellular component
cell adhesion InterProScan biological process
membrane Blast cellular component
extracellular exosome Blast cellular component
extracellular region part Blast cellular component
structural molecule activity Blast molecular function
macromolecular complex binding Blast molecular function
intrinsic component of membrane Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
extracellular matrix structural constituent Hs molecular function 42.7 3.19e-04
calcium ion binding Hs molecular function 48.5 5.95e-06
protein binding Hs molecular function 48.5 5.95e-06
collagen binding Hs molecular function 48.1 6.36e-06
extracellular region Hs cellular component 48.5 5.95e-06
proteinaceous extracellular matrix Hs cellular component 48.1 6.36e-06
basement membrane Hs cellular component 48.1 6.36e-06
extracellular space Hs cellular component 48.1 6.36e-06
plasma membrane Hs cellular component 48.1 6.36e-06
membrane Hs cellular component 42.7 3.19e-04
extracellular matrix Hs cellular component 48.1 6.36e-06
anchored component of membrane Hs cellular component 42.7 3.19e-04
extracellular exosome Hs cellular component 48.5 5.95e-06

GO (InterProScan)

1 result

GO Term Analysis Type e-value
cell-matrix adhesion Pfam biological process 2.7E-9