Aniseed - Gene card

Gene Card

Best human hits

RFC2; RFC4; RFC5

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012952

Gene Model ID

KH2012:KH.L67.1

Location

KhL67:63753..67017

Transcript Models and Sequences

KH2012:KH.L67.1.v1.A.ND2-1
KH2012:KH.L67.1.v1.A.nonSL3-1
KH2012:KH.L67.1.v1.A.SL1-1
KH2012:KH.L67.1.v1.A.SL4-1
KH2012:KH.L67.1.v2.A.SL5-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000018895
NCBI Reference Sequence	XM_002129674.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb015p17

Plate: R1CiGC30n02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Rep_factorC_C	Pfam	Replication factor C, C-terminal
AAA+_ATPase	SMART	AAA+ ATPase domain
DNA_pol3_clamp-load_cplx_C	SUPERFAMILY	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
ATPase_AAA_core	Pfam	ATPase, AAA-type, core

GOSlim

14 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
DNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
DNA replication	Orthology	biological process
DNA repair	Orthology	biological process
enzyme binding	Orthology	molecular function
nucleoside-triphosphatase activity	Orthology	molecular function
intracellular organelle part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
macromolecular complex	Orthology	cellular component
cellular response to DNA damage stimulus	Orthology	biological process

GO (Orthology)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
DNA binding	Hs	molecular function
DNA clamp loader activity	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
DNA replication factor C complex	Hs	cellular component
DNA replication	Hs	biological process
DNA repair	Hs	biological process
transcription-coupled nucleotide-excision repair	Hs	biological process
nucleotide-excision repair, DNA incision, 5'-to lesion	Hs	biological process
nucleotide-excision repair, DNA gap filling	Hs	biological process
enzyme binding	Hs	molecular function
translesion synthesis	Hs	biological process
Ctf18 RFC-like complex	Hs	cellular component
nucleotide-excision repair, DNA incision	Hs	biological process
error-prone translesion synthesis	Hs	biological process
DNA damage response, detection of DNA damage	Hs	biological process
single-stranded DNA-dependent ATPase activity	Hs	molecular function

GO (Blast)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	482	9.74e-173
DNA binding	Hs	molecular function	482	9.74e-173
DNA clamp loader activity	Hs	molecular function	482	9.74e-173
protein binding	Hs	molecular function	482	9.74e-173
ATP binding	Hs	molecular function	482	9.74e-173
nucleus	Hs	cellular component	482	9.74e-173
nucleoplasm	Hs	cellular component	482	9.74e-173
DNA replication factor C complex	Hs	cellular component	482	9.74e-173
enzyme binding	Hs	molecular function	482	9.74e-173
Ctf18 RFC-like complex	Hs	cellular component	482	9.74e-173
single-stranded DNA-dependent ATPase activity	Hs	molecular function	482	9.74e-173

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA binding	SUPERFAMILY	molecular function	5.1E-22
ATP binding	Pfam	molecular function	2.0E-16
DNA replication	SUPERFAMILY	biological process	5.1E-22