Aniseed - Gene card

Gene Card

Best human hits

NOP56; NOP58; PRPF31

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013108

Gene Model ID

KH2012:KH.L8.2

Location

KhL8:222884..225044

Transcript Models and Sequences

KH2012:KH.L8.2.v1.B.nonSL4-1
KH2012:KH.L8.2.v1.B.SL1-1
KH2012:KH.L8.2.v1.B.SL2-1
KH2012:KH.L8.2.v1.B.SL3-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000019946
NCBI Reference Sequence	XM_002127946.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb7m6

Plate: R1CiGC29d02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Nop_dom	Pfam	Nop domain
Nop_dom_sf	SUPERFAMILY	Nop domain superfamily
Nop_dom	ProSiteProfiles	Nop domain
NOSIC	SMART	NOSIC
NOP5_N	Pfam	NOP5, N-terminal
Helix_hairpin_bin_sf	Gene3D	Helix hairpin bin domain superfamily

GOSlim

18 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Blast	cellular component
membrane	Orthology	cellular component
nuclear speck	Blast	cellular component
RNA processing	Orthology	biological process
macromolecular complex	Orthology	cellular component
cell adhesion molecule binding	Orthology	molecular function
enzyme binding	Orthology	molecular function
macromolecular complex binding	Blast	molecular function
transcription factor binding	Blast	molecular function
nuclear part	Blast	cellular component
nuclear body	Blast	cellular component
nucleoplasm part	Blast	cellular component

GO (Orthology)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
rRNA modification	Hs	biological process
fibrillar center	Hs	cellular component
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
small nucleolar ribonucleoprotein complex	Hs	cellular component
cytoplasm	Hs	cellular component
rRNA processing	Hs	biological process
membrane	Hs	cellular component
snoRNA binding	Hs	molecular function
intracellular ribonucleoprotein complex	Hs	cellular component
box C/D snoRNP complex	Hs	cellular component
small-subunit processome	Hs	cellular component
ribosome biogenesis	Hs	biological process
cadherin binding	Hs	molecular function
pre-snoRNP complex	Hs	cellular component
histone methyltransferase binding	Hs	molecular function

GO (Blast)

33 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
TFIID-class transcription factor binding	Hs	molecular function	274	2.60e-86
fibrillar center	Hs	cellular component	486	3.39e-168
RNA binding	Hs	molecular function	486	3.39e-168
protein binding	Hs	molecular function	486	3.39e-168
nucleus	Hs	cellular component	486	3.39e-168
nucleoplasm	Hs	cellular component	486	3.39e-168
spliceosomal complex	Hs	cellular component	81.3	2.04e-16
U2-type spliceosomal complex	Hs	cellular component	81.3	2.04e-16
U4 snRNP	Hs	cellular component	81.3	2.04e-16
U4atac snRNP	Hs	cellular component	81.3	2.04e-16
nucleolus	Hs	cellular component	486	3.39e-168
small nucleolar ribonucleoprotein complex	Hs	cellular component	486	3.39e-168
cytoplasm	Hs	cellular component	486	3.39e-168
cytosol	Hs	cellular component	274	2.60e-86
Cajal body	Hs	cellular component	274	2.60e-86
membrane	Hs	cellular component	486	3.39e-168
nuclear speck	Hs	cellular component	81.3	2.04e-16
snoRNA binding	Hs	molecular function	486	3.39e-168
intracellular ribonucleoprotein complex	Hs	cellular component	486	3.39e-168
U4 snRNA binding	Hs	molecular function	81.3	2.04e-16
U4atac snRNA binding	Hs	molecular function	81.3	2.04e-16
box C/D snoRNP complex	Hs	cellular component	486	3.39e-168
small-subunit processome	Hs	cellular component	486	3.39e-168
ribonucleoprotein complex binding	Hs	molecular function	81.3	2.04e-16
cadherin binding	Hs	molecular function	486	3.39e-168
U4/U6 x U5 tri-snRNP complex	Hs	cellular component	81.3	2.04e-16
ATPase binding	Hs	molecular function	274	2.60e-86
pre-snoRNP complex	Hs	cellular component	486	3.39e-168
snRNP binding	Hs	molecular function	81.3	2.04e-16
U2-type precatalytic spliceosome	Hs	cellular component	81.3	2.04e-16
precatalytic spliceosome	Hs	cellular component	81.3	2.04e-16
MLL1 complex	Hs	cellular component	81.3	2.04e-16
histone methyltransferase binding	Hs	molecular function	486	3.39e-168

GO (InterProScan)