Aniseed - Gene card

Gene Card

Best human hits

RALGDS; RGL1; RGL3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013124

Gene Model ID

KH2012:KH.L81.2

Location

KhL81:8073..17344

Transcript Models and Sequences

KH2012:KH.L81.2.v1.A.nonSL5-1
KH2012:KH.L81.2.v1.A.nonSL6-1
KH2012:KH.L81.2.v1.A.nonSL7-1
KH2012:KH.L81.2.v1.A.nonSL8-1
KH2012:KH.L81.2.v1.A.SL3-1
KH2012:KH.L81.2.v1.R.ND2-1
KH2012:KH.L81.2.v2.A.SL4-1
KH2012:KH.L81.2.v2.R.ND1-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000000271
ENSEMBL	ENSCING00000015069
NCBI Reference Sequence	XM_009863537.2
NCBI Reference Sequence	XM_018816257.1

Collections

Gene collection 1 (N. Satoh)

2 results

ciad008l24

Plate: R1CiGC01j10

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term	Analysis	Definition
Ras-like_Gua-exchang_fac_N	ProSiteProfiles	Ras-like guanine nucleotide exchange factor, N-terminal
Ras_GEF_dom_sf	SUPERFAMILY	Ras guanine nucleotide exchange factor domain superfamily
Ubiquitin-like_domsf	SUPERFAMILY	Ubiquitin-like domain superfamily
Ras_G-nucl-exch_fac_CS	ProSitePatterns	Ras guanine-nucleotide exchange factor, conserved site
RASGEF_cat_dom	SMART	Ras guanine-nucleotide exchange factors catalytic domain
RASGEF_cat_dom	CDD	Ras guanine-nucleotide exchange factors catalytic domain
Ras-like_Gua-exchang_fac_N	SMART	Ras-like guanine nucleotide exchange factor, N-terminal
RA_dom	ProSiteProfiles	Ras-associating (RA) domain
RASGEF_cat_dom	Pfam	Ras guanine-nucleotide exchange factors catalytic domain
Ras-like_Gua-exchang_fac_N	Pfam	Ras-like guanine nucleotide exchange factor, N-terminal
RASGEF_cat_dom_sf	Gene3D	Ras guanine-nucleotide exchange factor catalytic domain superfamily
RASGEF_cat_dom	ProSiteProfiles	Ras guanine-nucleotide exchange factors catalytic domain
Ras-like_Gua-exchang_fac_N	CDD	Ras-like guanine nucleotide exchange factor, N-terminal

GOSlim

19 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
brush border	Orthology	cellular component
signal transduction	Orthology	biological process
small GTPase mediated signal transduction	Orthology	biological process
GTPase regulator activity	Orthology	molecular function
positive regulation of GTPase activity	Orthology	biological process
regulation of catalytic activity	Orthology	biological process
regulation of molecular function	Orthology	biological process
enzyme binding	Orthology	molecular function
molecular function regulator	Orthology	molecular function
organic substance metabolic process	Orthology	biological process
negative regulation of apoptotic process	Orthology	biological process
intracellular signal transduction	Orthology	biological process
positive regulation of signal transduction	Orthology	biological process
regulation of signal transduction	Orthology	biological process

GO (Orthology)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
guanyl-nucleotide exchange factor activity	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
brush border	Hs	cellular component
signal transduction	Hs	biological process
small GTPase mediated signal transduction	Hs	biological process
Ras protein signal transduction	Hs	biological process
Ral guanyl-nucleotide exchange factor activity	Hs	molecular function
Ras GTPase binding	Hs	molecular function
regulation of lipid metabolic process	Hs	biological process
GTPase regulator activity	Hs	molecular function
small GTPase binding	Hs	molecular function
positive regulation of GTPase activity	Hs	biological process
regulation of catalytic activity	Hs	biological process
regulation of molecular function	Hs	biological process
Ras guanyl-nucleotide exchange factor activity	Hs	molecular function
Rho guanyl-nucleotide exchange factor activity	Hs	molecular function
negative regulation of cardiac muscle cell apoptotic process	Hs	biological process
positive regulation of phosphatidylinositol 3-kinase signaling	Hs	biological process
regulation of Ral protein signal transduction	Hs	biological process

GO (Blast)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
guanyl-nucleotide exchange factor activity	Hs	molecular function	305	1.22e-89
protein binding	Hs	molecular function	305	1.22e-89
intracellular	Hs	cellular component	212	7.35e-57
nucleus	Hs	cellular component	212	7.35e-57
cytoplasm	Hs	cellular component	212	7.35e-57
cytosol	Hs	cellular component	305	1.22e-89
brush border	Hs	cellular component	212	7.35e-57
Ral guanyl-nucleotide exchange factor activity	Hs	molecular function	305	1.22e-89
Ras GTPase binding	Hs	molecular function	196	3.64e-52
GTPase regulator activity	Hs	molecular function	212	7.35e-57
small GTPase binding	Hs	molecular function	196	3.64e-52

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
guanyl-nucleotide exchange factor activity	Gene3D	molecular function	1.5E-77
signal transduction	ProSiteProfiles	biological process	8.989
small GTPase mediated signal transduction	Gene3D	biological process	1.5E-77