Gene Card
Best human hits
COPA; COPB2; PAFAH1B1
Unique Gene ID
Cirobu.g00013163
Gene Model ID
KH2012:KH.L84.6
Location
KhL84:114000..122939
Transcript Models and Sequences
KH2012:KH.L84.6.v1.A.nonSL3-1
KH2012:KH.L84.6.v1.A.nonSL4-1
KH2012:KH.L84.6.v1.A.nonSL5-1
KH2012:KH.L84.6.v1.A.nonSL7-1
KH2012:KH.L84.6.v1.A.nonSL8-1
KH2012:KH.L84.6.v1.A.SL2-1
KH2012:KH.L84.6.v1.R.ND1-1
KH2012:KH.L84.6.v2.A.nonSL3-1
KH2012:KH.L84.6.v2.A.nonSL4-1
KH2012:KH.L84.6.v2.A.nonSL5-1
KH2012:KH.L84.6.v2.A.nonSL7-1
KH2012:KH.L84.6.v2.A.nonSL8-1
KH2012:KH.L84.6.v2.A.SL2-1
KH2012:KH.L84.6.v2.R.ND1-1
KH2012:KH.L84.6.v3.A.SL6-1
External database links
3 results
Gateway full ORF
2 results
cien57218
Plate: VES79_E07
cien187205
Plate: VES99_N05
Gene collection 1 (N. Satoh)
1 result
cilv022n07
Plate: R1CiGC26p04
n/a
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Click here to see the tree inference method
InterPro
10 results
| IPR Term | Analysis | Definition |
|---|---|---|
| WD40/YVTN_repeat-like_dom_sf | Gene3D | WD40/YVTN repeat-like-containing domain superfamily |
| WD40_repeat | ProSiteProfiles | WD40 repeat |
| G-protein_beta_WD-40_rep | PRINTS | G-protein beta WD-40 repeat |
| COPB2 | PIRSF | Coatomer beta' subunit (COPB2) |
| WD40_repeat | SMART | WD40 repeat |
| WD40_repeat_dom_sf | SUPERFAMILY | WD40-repeat-containing domain superfamily |
| Coatomer_WD-assoc_reg | Pfam | Coatomer, WD associated region |
| WD40_repeat | Pfam | WD40 repeat |
| Quino_amine_DH_bsu | SUPERFAMILY | Quinoprotein amine dehydrogenase, beta chain-like |
| WD40_repeat_dom | ProSiteProfiles | WD40-repeat-containing domain |
GOSlim
57 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| Golgi membrane | Orthology | cellular component |
| structural molecule activity | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| extracellular region | Blast | cellular component |
| extracellular space | Blast | cellular component |
| nucleus | Blast | cellular component |
| nuclear envelope | Blast | cellular component |
| cytoplasm | Orthology | cellular component |
| endoplasmic reticulum membrane | Orthology | cellular component |
| Golgi apparatus | Orthology | cellular component |
| centrosome | Blast | cellular component |
| microtubule organizing center | Blast | cellular component |
| cytosol | Orthology | cellular component |
| cytoskeleton | Blast | cellular component |
| microtubule | Blast | cellular component |
| intracellular protein transport | Orthology | biological process |
| microtubule binding | Blast | molecular function |
| protein transport | Orthology | biological process |
| microtubule cytoskeleton | Blast | cellular component |
| membrane | Orthology | cellular component |
| axon | Blast | cellular component |
| cell leading edge | Blast | cellular component |
| cytoplasmic vesicle | Orthology | cellular component |
| nuclear membrane | Blast | cellular component |
| vesicle | Blast | cellular component |
| protein homodimerization activity | Blast | molecular function |
| neuron projection | Blast | cellular component |
| neuronal cell body | Blast | cellular component |
| perinuclear region of cytoplasm | Blast | cellular component |
| extracellular exosome | Blast | cellular component |
| intracellular transport | Orthology | biological process |
| cytoplasmic part | Orthology | cellular component |
| membrane part | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
| whole membrane | Orthology | cellular component |
| bounding membrane of organelle | Orthology | cellular component |
| Golgi apparatus part | Orthology | cellular component |
| endomembrane system | Orthology | cellular component |
| intracellular organelle part | Orthology | cellular component |
| intracellular non-membrane-bounded organelle | Blast | cellular component |
| hydrolase activity | Blast | molecular function |
| receptor binding | Blast | molecular function |
| molecular function regulator | Blast | molecular function |
| regulation of signal transduction | Blast | biological process |
| signaling receptor activity | Blast | molecular function |
| cytoskeletal part | Blast | cellular component |
| cell periphery | Blast | cellular component |
| anion binding | Blast | molecular function |
| carbohydrate derivative binding | Blast | molecular function |
| cell projection part | Blast | cellular component |
| organelle | Blast | cellular component |
| cell projection | Blast | cellular component |
| plasma membrane region | Blast | cellular component |
| cluster of actin-based cell projections | Blast | cellular component |
| cytoskeletal protein binding | Blast | molecular function |
| enzyme binding | Blast | molecular function |
| macromolecular complex binding | Blast | molecular function |
GO (Orthology)
20 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| Golgi membrane | Hs | cellular component |
| structural molecule activity | Hs | molecular function |
| protein binding | Hs | molecular function |
| cytoplasm | Hs | cellular component |
| endoplasmic reticulum membrane | Hs | cellular component |
| Golgi apparatus | Hs | cellular component |
| cytosol | Hs | cellular component |
| intracellular protein transport | Hs | biological process |
| ER to Golgi vesicle-mediated transport | Hs | biological process |
| retrograde vesicle-mediated transport, Golgi to ER | Hs | biological process |
| intra-Golgi vesicle-mediated transport | Hs | biological process |
| protein transport | Hs | biological process |
| membrane | Hs | cellular component |
| vesicle-mediated transport | Hs | biological process |
| membrane coat | Hs | cellular component |
| COPI vesicle coat | Hs | cellular component |
| transport vesicle | Hs | cellular component |
| COPI-coated vesicle membrane | Hs | cellular component |
| cytoplasmic vesicle | Hs | cellular component |
| toxin transport | Hs | biological process |
GO (Blast)
51 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| Golgi membrane | Hs | cellular component | 1446 | 0.0 |
| astral microtubule | Hs | cellular component | 111 | 5.06e-26 |
| kinetochore | Hs | cellular component | 111 | 5.06e-26 |
| phospholipase A2 activity | Hs | molecular function | 111 | 5.06e-26 |
| hormone activity | Hs | molecular function | 245 | 2.35e-67 |
| structural molecule activity | Hs | molecular function | 1446 | 0.0 |
| protein binding | Hs | molecular function | 1446 | 0.0 |
| extracellular region | Hs | cellular component | 245 | 2.35e-67 |
| extracellular space | Hs | cellular component | 245 | 2.35e-67 |
| nucleus | Hs | cellular component | 111 | 5.06e-26 |
| nuclear envelope | Hs | cellular component | 111 | 5.06e-26 |
| cytoplasm | Hs | cellular component | 1446 | 0.0 |
| endoplasmic reticulum membrane | Hs | cellular component | 1446 | 0.0 |
| Golgi apparatus | Hs | cellular component | 1446 | 0.0 |
| centrosome | Hs | cellular component | 111 | 5.06e-26 |
| microtubule organizing center | Hs | cellular component | 111 | 5.06e-26 |
| spindle | Hs | cellular component | 111 | 5.06e-26 |
| cytosol | Hs | cellular component | 1446 | 0.0 |
| cytoskeleton | Hs | cellular component | 111 | 5.06e-26 |
| kinesin complex | Hs | cellular component | 111 | 5.06e-26 |
| microtubule | Hs | cellular component | 111 | 5.06e-26 |
| microtubule associated complex | Hs | cellular component | 111 | 5.06e-26 |
| cell cortex | Hs | cellular component | 111 | 5.06e-26 |
| microtubule binding | Hs | molecular function | 111 | 5.06e-26 |
| heparin binding | Hs | molecular function | 111 | 5.06e-26 |
| microtubule cytoskeleton | Hs | cellular component | 111 | 5.06e-26 |
| membrane | Hs | cellular component | 1446 | 0.0 |
| membrane coat | Hs | cellular component | 1446 | 0.0 |
| COPI vesicle coat | Hs | cellular component | 1446 | 0.0 |
| transport vesicle | Hs | cellular component | 1446 | 0.0 |
| axon | Hs | cellular component | 111 | 5.06e-26 |
| growth cone | Hs | cellular component | 111 | 5.06e-26 |
| COPI-coated vesicle membrane | Hs | cellular component | 1446 | 0.0 |
| cell leading edge | Hs | cellular component | 111 | 5.06e-26 |
| cytoplasmic vesicle | Hs | cellular component | 1446 | 0.0 |
| motile cilium | Hs | cellular component | 111 | 5.06e-26 |
| nuclear membrane | Hs | cellular component | 111 | 5.06e-26 |
| vesicle | Hs | cellular component | 111 | 5.06e-26 |
| stereocilium | Hs | cellular component | 111 | 5.06e-26 |
| dynactin binding | Hs | molecular function | 111 | 5.06e-26 |
| protein homodimerization activity | Hs | molecular function | 111 | 5.06e-26 |
| neuron projection | Hs | cellular component | 111 | 5.06e-26 |
| neuronal cell body | Hs | cellular component | 111 | 5.06e-26 |
| phospholipase binding | Hs | molecular function | 111 | 5.06e-26 |
| dynein intermediate chain binding | Hs | molecular function | 111 | 5.06e-26 |
| perinuclear region of cytoplasm | Hs | cellular component | 111 | 5.06e-26 |
| phosphoprotein binding | Hs | molecular function | 111 | 5.06e-26 |
| extracellular exosome | Hs | cellular component | 245 | 2.35e-67 |
| dynein complex binding | Hs | molecular function | 111 | 5.06e-26 |
| central region of growth cone | Hs | cellular component | 111 | 5.06e-26 |
| axon cytoplasm | Hs | cellular component | 111 | 5.06e-26 |
GO (InterProScan)
5 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| structural molecule activity | Pfam | molecular function | 1.7E-167 |
| protein binding | Gene3D | molecular function | 3.2E-108 |
| intracellular protein transport | Pfam | biological process | 1.7E-167 |
| vesicle-mediated transport | Pfam | biological process | 1.7E-167 |
| membrane coat | Pfam | cellular component | 1.7E-167 |
