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GENE CARD

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  1. Gene 'Phfumi.CG.MTP2014.S4...' > 

Gene Card

Best human hits

AC018523.2; PSMA1; PSMA5

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013246

Gene Model ID

KH2012:KH.L9.2

Location

KhL9:166474..169229

Transcript Models and Sequences

  KH2012:KH.L9.2.v1.A.nonSL2-1
KH2012:KH.L9.2.v1.A.nonSL3-1
KH2012:KH.L9.2.v1.A.nonSL4-1
KH2012:KH.L9.2.v1.R.ND1-1
KH2012:KH.L9.2.v2.A.nonSL2-1
KH2012:KH.L9.2.v2.A.nonSL3-1
KH2012:KH.L9.2.v2.A.nonSL4-1
KH2012:KH.L9.2.v2.R.ND1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000005222
NCBI Reference Sequence XM_009863581.2
Collections

Gateway full ORF

2 results

cima867408

Plate: VES66_E03

cima891354

Plate: VES70_A20

Gene collection 1 (N. Satoh)

1 result

cieg017b16

Plate: R1CiGC18i11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
Proteasome_alpha-type ProSiteProfiles Proteasome alpha-type subunit
Proteasome_alpha1 PANTHER Proteasome subunit alpha 1
Proteasome_sua/b Pfam Proteasome, subunit alpha/beta
Ntn_hydrolases_N Gene3D Nucleophile aminohydrolases, N-terminal
Proteasome_asu_N ProSitePatterns Proteasome alpha-subunit, N-terminal domain
Proteasome_asu_N SMART Proteasome alpha-subunit, N-terminal domain
Proteasome_alpha1 CDD Proteasome subunit alpha 1
Proteasome_asu_N Pfam Proteasome alpha-subunit, N-terminal domain
Ntn_hydrolases_N SUPERFAMILY Nucleophile aminohydrolases, N-terminal

GOSlim

40 results

GO Term Annotation Origin Type
protein polyubiquitination Orthology biological process
immune system process Orthology biological process
RNA binding Orthology molecular function
endopeptidase activity Orthology molecular function
protein binding Orthology molecular function
extracellular region Blast cellular component
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
centrosome Orthology cellular component
cytosol Orthology cellular component
proteolysis Orthology biological process
peptidase activity Orthology molecular function
membrane Blast cellular component
integral component of membrane Blast cellular component
hydrolase activity Orthology molecular function
transmembrane transport Orthology biological process
extracellular exosome Orthology cellular component
negative regulation of canonical Wnt signaling pathway Orthology biological process
positive regulation of canonical Wnt signaling pathway Orthology biological process
intracellular signal transduction Orthology biological process
protein phosphorylation Orthology biological process
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
G2/M transition of mitotic cell cycle Orthology biological process
peptidase activity, acting on L-amino acid peptides Orthology molecular function
cytokine-mediated signaling pathway Orthology biological process
transcription factor activity, sequence-specific DNA binding Orthology molecular function
cell surface receptor signaling pathway Orthology biological process
immune response Orthology biological process
mRNA catabolic process Orthology biological process
cellular protein modification process Orthology biological process
cell-cell signaling Orthology biological process
anatomical structure morphogenesis Orthology biological process
animal organ development Orthology biological process
cell differentiation Orthology biological process
intracellular organelle part Blast cellular component
cytoplasmic vesicle Blast cellular component
endomembrane system Blast cellular component
intracellular organelle lumen Blast cellular component

GO (Orthology)

40 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
MAPK cascade Hs biological process
protein polyubiquitination Hs biological process
proteasome complex Hs cellular component
immune system process Hs biological process
RNA binding Hs molecular function
endopeptidase activity Hs molecular function
threonine-type endopeptidase activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
centrosome Hs cellular component
cytosol Hs cellular component
proteasome core complex Hs cellular component
polysome Hs cellular component
proteolysis Hs biological process
ubiquitin-dependent protein catabolic process Hs biological process
peptidase activity Hs molecular function
negative regulation of G2/M transition of mitotic cell cycle Hs biological process
protein deubiquitination Hs biological process
hydrolase activity Hs molecular function
proteasome core complex, alpha-subunit complex Hs cellular component
anaphase-promoting complex-dependent catabolic process Hs biological process
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Hs biological process
tumor necrosis factor-mediated signaling pathway Hs biological process
NIK/NF-kappaB signaling Hs biological process
Fc-epsilon receptor signaling pathway Hs biological process
proteasome-mediated ubiquitin-dependent protein catabolic process Hs biological process
regulation of mRNA stability Hs biological process
post-translational protein modification Hs biological process
T cell receptor signaling pathway Hs biological process
negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle Hs biological process
proteolysis involved in cellular protein catabolic process Hs biological process
transmembrane transport Hs biological process
Wnt signaling pathway, planar cell polarity pathway Hs biological process
extracellular exosome Hs cellular component
interleukin-1-mediated signaling pathway Hs biological process
negative regulation of canonical Wnt signaling pathway Hs biological process
positive regulation of canonical Wnt signaling pathway Hs biological process
regulation of hematopoietic stem cell differentiation Hs biological process

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
proteasome complex Hs cellular component 377 3.87e-133
RNA binding Hs molecular function 377 3.87e-133
endopeptidase activity Hs molecular function 377 3.87e-133
threonine-type endopeptidase activity Hs molecular function 377 3.87e-133
protein binding Hs molecular function 377 3.87e-133
extracellular region Hs cellular component 140 1.47e-40
nucleus Hs cellular component 377 3.87e-133
nucleoplasm Hs cellular component 377 3.87e-133
cytoplasm Hs cellular component 377 3.87e-133
centrosome Hs cellular component 377 3.87e-133
cytosol Hs cellular component 377 3.87e-133
proteasome core complex Hs cellular component 377 3.87e-133
polysome Hs cellular component 377 3.87e-133
peptidase activity Hs molecular function 377 3.87e-133
membrane Hs cellular component 186 1.27e-59
integral component of membrane Hs cellular component 186 1.27e-59
hydrolase activity Hs molecular function 377 3.87e-133
proteasome core complex, alpha-subunit complex Hs cellular component 377 3.87e-133
secretory granule lumen Hs cellular component 140 1.47e-40
extracellular exosome Hs cellular component 377 3.87e-133
ficolin-1-rich granule lumen Hs cellular component 140 1.47e-40

GO (InterProScan)

6 results

GO Term Analysis Type e-value
endopeptidase activity Pfam molecular function 4.9E-13
threonine-type endopeptidase activity Pfam molecular function 2.9E-54
proteasome core complex Pfam cellular component 2.9E-54
ubiquitin-dependent protein catabolic process Pfam biological process 4.9E-13
proteasome core complex, alpha-subunit complex CDD cellular component 1.60786E-142
proteolysis involved in cellular protein catabolic process Pfam biological process 2.9E-54

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