Aniseed - Gene card

Gene Card

Best human hits

RBM24; RBM3; RBM38

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013254

Gene Model ID

KH2012:KH.L9.27

Location

KhL9:79782..84884

Transcript Models and Sequences

KH2012:KH.L9.27.v1.A.SL1-1
KH2012:KH.L9.27.v1.A.SL2-1
KH2012:KH.L9.27.v1.A.SL3-1
KH2012:KH.L9.27.v2.A.SL2-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000025102
NCBI Reference Sequence	XM_002119977.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

ciad002e04

Plate: R1CiGC01i17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
RRM_dom	ProSiteProfiles	RNA recognition motif domain
RRM_dom	SMART	RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom	Pfam	RNA recognition motif domain
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily

GOSlim

14 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Blast	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Blast	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
cell differentiation	Orthology	biological process
cell projection	Blast	cellular component
anatomical structure development	Orthology	biological process
mRNA catabolic process	Orthology	biological process
intracellular organelle part	Blast	cellular component
ribosome	Blast	cellular component

GO (Orthology)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA 3'-UTR binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
regulation of myotube differentiation	Hs	biological process
cell differentiation	Hs	biological process
regulation of mRNA stability	Hs	biological process

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	191	1.31e-60
RNA binding	Hs	molecular function	191	1.31e-60
mRNA binding	Hs	molecular function	186	2.96e-58
mRNA 3'-UTR binding	Hs	molecular function	191	1.31e-60
protein binding	Hs	molecular function	68.6	2.64e-14
nucleus	Hs	cellular component	191	1.31e-60
nucleoplasm	Hs	cellular component	191	1.31e-60
nucleolus	Hs	cellular component	68.6	2.64e-14
cytoplasm	Hs	cellular component	191	1.31e-60
cytosol	Hs	cellular component	191	1.31e-60
large ribosomal subunit	Hs	cellular component	68.6	2.64e-14
dendrite	Hs	cellular component	68.6	2.64e-14
cell projection	Hs	cellular component	68.6	2.64e-14

GO (InterProScan)