Aniseed - Gene card

Gene Card

Best human hits

RPS25

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013315

Gene Model ID

KH2012:KH.L95.1

Location

KhL95:52071..54366

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000010423
NCBI Reference Sequence	XM_002130667.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cigd046c03

Plate: R1CiGC41n13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Ribosomal_S25	Pfam	Ribosomal protein S25
Ribosomal_S25	PANTHER	Ribosomal protein S25
Ribosomal_S25	ProDom	Ribosomal protein S25
WH-like_DNA-bd_sf	Gene3D	Winged helix-like DNA-binding domain superfamily

GOSlim

13 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component

GO (Orthology)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
small ribosomal subunit	Hs	cellular component
cytosolic small ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
extracellular exosome	Hs	cellular component

GO (Blast)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	123	1.36e-37
protein binding	Hs	molecular function	123	1.36e-37
nucleus	Hs	cellular component	123	1.36e-37
nucleoplasm	Hs	cellular component	123	1.36e-37
nucleolus	Hs	cellular component	123	1.36e-37
cytosol	Hs	cellular component	123	1.36e-37
ribosome	Hs	cellular component	123	1.36e-37
small ribosomal subunit	Hs	cellular component	123	1.36e-37
cytosolic small ribosomal subunit	Hs	cellular component	123	1.36e-37
intracellular ribonucleoprotein complex	Hs	cellular component	123	1.36e-37
extracellular exosome	Hs	cellular component	123	1.36e-37

GO (InterProScan)

No result

GO Term	Analysis	Type	e-value

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences

External database links

Gateway full ORF

cima835232

cima864866

Gene collection 1 (N. Satoh)

cieg040a20

cigd046c03

Regulatory Regions

InterPro

GOSlim

GO (Orthology)

GO (Blast)

GO (InterProScan)