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GENE CARD

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Gene Card

Best human hits

SMG5; SMG6; SMG7

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013375

Gene Model ID

KH2012:KH.L96.32

Location

KhL96:724246..736445

Transcript Models and Sequences

  KH2012:KH.L96.32.v1.A.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XM_002122491.4
Collections

Gateway full ORF

2 results

cien36566

Plate: VES76_G04

cien148337

Plate: VES93_A11

Gene collection 1 (N. Satoh)

1 result

cilv024e12

Plate: R1CiGC27e23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
EST1 Pfam Telomerase activating protein Est1
PIN_dom Pfam PIN domain
TPR-like_helical_dom_sf SUPERFAMILY Tetratricopeptide-like helical domain superfamily
DNA/RNA-bd_Est1-type Pfam DNA/RNA-binding domain, Est1-type

GOSlim

29 results

GO Term Annotation Origin Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Orthology biological process
DNA binding Blast molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleolus Blast cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
hydrolase activity Orthology molecular function
ubiquitin protein ligase binding Orthology molecular function
metal ion binding Blast molecular function
RNA metabolic process Orthology biological process
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
intracellular protein transport Orthology biological process
gene expression Orthology biological process
organelle organization Orthology biological process
DNA metabolic process Orthology biological process
transferase activity, transferring phosphorus-containing groups Orthology molecular function
dephosphorylation Orthology biological process
regulation of cellular metabolic process Orthology biological process
sequence-specific DNA binding Orthology molecular function
enzyme binding Orthology molecular function
macromolecular complex binding Orthology molecular function
RNA catabolic process Orthology biological process
regulation of gene expression Orthology biological process
intracellular organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
cytoskeleton Blast cellular component

GO (Orthology)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Hs biological process
ribonuclease activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
telomerase holoenzyme complex Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
mRNA export from nucleus Hs biological process
ubiquitin protein ligase binding Hs molecular function
regulation of telomere maintenance via telomerase Hs biological process
regulation of dephosphorylation Hs biological process
telomeric DNA binding Hs molecular function
histone deacetylase binding Hs molecular function
ribonucleoprotein complex binding Hs molecular function
regulation of RNA stability Hs biological process
protein phosphatase 2A binding Hs molecular function
telomerase RNA binding Hs molecular function
DNA polymerase binding Hs molecular function
RNA phosphodiester bond hydrolysis Hs biological process

GO (Blast)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
telomerase catalytic core complex Hs cellular component 58.2 3.14e-08
chromosome, telomeric region Hs cellular component 58.2 3.14e-08
DNA binding Hs molecular function 58.2 3.14e-08
RNA binding Hs molecular function 58.2 3.14e-08
nuclease activity Hs molecular function 58.2 3.14e-08
endonuclease activity Hs molecular function 58.2 3.14e-08
endoribonuclease activity Hs molecular function 58.2 3.14e-08
ribonuclease activity Hs molecular function 427 1.51e-132
protein binding Hs molecular function 427 1.51e-132
nucleus Hs cellular component 427 1.51e-132
chromosome Hs cellular component 58.2 3.14e-08
telomerase holoenzyme complex Hs cellular component 427 1.51e-132
nucleolus Hs cellular component 58.2 3.14e-08
cytoplasm Hs cellular component 427 1.51e-132
cytosol Hs cellular component 427 1.51e-132
hydrolase activity Hs molecular function 58.2 3.14e-08
ubiquitin protein ligase binding Hs molecular function 427 1.51e-132
exon-exon junction complex Hs cellular component 58.2 3.14e-08
telomeric DNA binding Hs molecular function 427 1.51e-132
histone deacetylase binding Hs molecular function 427 1.51e-132
ribonucleoprotein complex binding Hs molecular function 427 1.51e-132
intermediate filament cytoskeleton Hs cellular component 64.7 2.59e-10
metal ion binding Hs molecular function 58.2 3.14e-08
protein phosphatase 2A binding Hs molecular function 427 1.51e-132
telomerase RNA binding Hs molecular function 427 1.51e-132
DNA polymerase binding Hs molecular function 427 1.51e-132

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 2.58E-49

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