Aniseed - Gene card

Gene Card

Best human hits

NCLN; TFR2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013390

Gene Model ID

KH2012:KH.L96.46

Location

KhL96:365844..371628

Transcript Models and Sequences

KH2012:KH.L96.46.v1.A.nonSL10-1
KH2012:KH.L96.46.v1.A.nonSL11-1
KH2012:KH.L96.46.v1.A.nonSL12-1
KH2012:KH.L96.46.v1.A.nonSL4-1
KH2012:KH.L96.46.v1.A.nonSL5-1
KH2012:KH.L96.46.v1.A.nonSL6-1
KH2012:KH.L96.46.v1.A.nonSL8-1
KH2012:KH.L96.46.v1.A.nonSL9-1
KH2012:KH.L96.46.v1.A.SL1-1
KH2012:KH.L96.46.v1.A.SL2-1
KH2012:KH.L96.46.v1.A.SL7-1
KH2012:KH.L96.46.v1.R.ND3-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000008655
NCBI Reference Sequence	XM_002130442.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg020i21

Plate: R1CiGC18p23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

1 result

IPR Term	Analysis	Definition
Peptidase_M28	Pfam	Peptidase M28

GOSlim

18 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
cytoplasm	Blast	cellular component
endoplasmic reticulum	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
plasma membrane	Blast	cellular component
integral component of plasma membrane	Blast	cellular component
regulation of signal transduction	Orthology	biological process
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
cytoplasmic vesicle	Blast	cellular component
membrane organization	Blast	biological process
organelle organization	Blast	biological process
plasma membrane part	Blast	cellular component
cell surface	Blast	cellular component
metal ion transport	Blast	biological process
transmembrane transport	Blast	biological process
protein transport	Blast	biological process
macromolecular complex	Blast	cellular component

GO (Orthology)

7 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein binding	Hs	molecular function
endoplasmic reticulum	Hs	cellular component
endoplasmic reticulum membrane	Hs	cellular component
regulation of signal transduction	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
protein destabilization	Hs	biological process

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
transferrin receptor activity	Hs	molecular function	43.1	4.37e-04
protein binding	Hs	molecular function	436	1.08e-147
cytoplasm	Hs	cellular component	43.1	4.37e-04
endoplasmic reticulum	Hs	cellular component	436	1.08e-147
endoplasmic reticulum membrane	Hs	cellular component	436	1.08e-147
plasma membrane	Hs	cellular component	43.1	4.37e-04
integral component of plasma membrane	Hs	cellular component	43.1	4.37e-04
external side of plasma membrane	Hs	cellular component	43.1	4.37e-04
membrane	Hs	cellular component	436	1.08e-147
integral component of membrane	Hs	cellular component	436	1.08e-147
cytoplasmic vesicle	Hs	cellular component	43.1	4.37e-04
transferrin transmembrane transporter activity	Hs	molecular function	43.1	4.37e-04
co-receptor binding	Hs	molecular function	43.1	4.37e-04
HFE-transferrin receptor complex	Hs	cellular component	43.1	4.37e-04

GO (InterProScan)