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GENE CARD

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Gene Card

Best human hits

TBX2; TBX3; TBX4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013435

Gene Model ID

KH2012:KH.L96.87

Location

KhL96:459803..474848

Transcript Models and Sequences

  KH2012:KH.L96.87.v1.A.SL1-1

External Database Gene Card

External database links

4 results

Database Gene ID
ENSEMBL ENSCING00000008678
NCBI Reference Sequence NM_001032448.1
NCBI Reference Sequence XM_018816364.1
NCBI Reference Sequence XM_018816365.1
Collections

Gene collection 1 (N. Satoh)

2 results

cicl027m20

Plate: R1CiGC11j20

cign020g23

Plate: R1CiGC42e17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

13 results

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
TF_T-box SMART Transcription factor, T-box
TF_T-box CDD Transcription factor, T-box
TF_T-box ProSiteProfiles Transcription factor, T-box
TF_T-box PANTHER Transcription factor, T-box
T-box_sf Gene3D T-box superfamily
p53-like_TF_DNA-bd SUPERFAMILY p53-like transcription factor, DNA-binding
TF_T-box Pfam Transcription factor, T-box
TF_Brachyury PRINTS Transcription factor, Brachyury
TF_T-box_CS ProSitePatterns Transcription factor, T-box, conserved site
TF_T-box PRINTS Transcription factor, T-box

GOSlim

33 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
blood vessel development Orthology biological process
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
Notch signaling pathway Orthology biological process
multicellular organism development Orthology biological process
positive regulation of cell proliferation Orthology biological process
regulation of cell proliferation Orthology biological process
negative regulation of apoptotic process Orthology biological process
sequence-specific DNA binding Orthology molecular function
negative regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
transcription factor binding Orthology molecular function
system development Orthology biological process
heart development Orthology biological process
anatomical structure morphogenesis Orthology biological process
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
anatomical structure development Orthology biological process
cell differentiation Orthology biological process
animal organ development Orthology biological process
developmental process Orthology biological process
reproductive process Orthology biological process
cell cycle Orthology biological process
cellular response to stress Orthology biological process
cell division Orthology biological process

GO (Orthology)

50 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
RNA polymerase II transcription factor binding Hs molecular function
RNA polymerase II activating transcription factor binding Hs molecular function
skeletal system development Hs biological process
blood vessel development Hs biological process
heart looping Hs biological process
heart morphogenesis Hs biological process
outflow tract morphogenesis Hs biological process
endocardial cushion morphogenesis Hs biological process
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
transcription factor complex Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
Notch signaling pathway Hs biological process
multicellular organism development Hs biological process
muscle cell fate determination Hs biological process
cell aging Hs biological process
regulation of heart contraction Hs biological process
positive regulation of cell proliferation Hs biological process
anterior/posterior axis specification, embryo Hs biological process
animal organ morphogenesis Hs biological process
specification of animal organ position Hs biological process
stem cell population maintenance Hs biological process
male genitalia development Hs biological process
female genitalia development Hs biological process
embryonic heart tube development Hs biological process
limb morphogenesis Hs biological process
embryonic hindlimb morphogenesis Hs biological process
atrioventricular canal development Hs biological process
regulation of cell proliferation Hs biological process
negative regulation of apoptotic process Hs biological process
sequence-specific DNA binding Hs molecular function
positive regulation of cell cycle Hs biological process
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
mesoderm morphogenesis Hs biological process
embryonic camera-type eye morphogenesis Hs biological process
cardiac muscle tissue development Hs biological process
cardiac muscle cell differentiation Hs biological process
palate development Hs biological process
pharynx development Hs biological process
cellular senescence Hs biological process
positive regulation of stem cell proliferation Hs biological process

GO (Blast)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 361 1.61e-113
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 361 1.61e-113
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 361 1.61e-113
RNA polymerase II transcription factor binding Hs molecular function 343 9.70e-107
RNA polymerase II activating transcription factor binding Hs molecular function 343 9.70e-107
DNA binding Hs molecular function 361 1.61e-113
transcription factor activity, sequence-specific DNA binding Hs molecular function 361 1.61e-113
protein binding Hs molecular function 361 1.61e-113
nucleus Hs cellular component 361 1.61e-113
transcription factor complex Hs cellular component 361 1.61e-113
sequence-specific DNA binding Hs molecular function 361 1.61e-113

GO (InterProScan)

3 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding PANTHER molecular function 6.6E-152
nucleus PANTHER cellular component 6.6E-152
regulation of transcription, DNA-templated PANTHER biological process 6.6E-152

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