Aniseed - Gene card

Gene Card

Best human hits

KHDRBS2; KHDRBS3; QKI

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013662

Gene Model ID

KH2012:KH.S115.4

Location

KhS115:99954..119006

Transcript Models and Sequences

KH2012:KH.S115.4.v1.A.SL1-1
KH2012:KH.S115.4.v1.A.SL2-1
KH2012:KH.S115.4.v2.A.SL1-2
KH2012:KH.S115.4.v2.A.SL2-2

External Database Gene Card

External database links

4 results

Database	Gene ID
NCBI Reference Sequence	XM_002127411.3
NCBI Reference Sequence	XM_009859613.1
NCBI Reference Sequence	XM_018816517.1
NCBI Reference Sequence	XM_018816518.1

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

2 results

cieg057p17

Plate: R1CiGC24d18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
KH_dom	SMART	K Homology domain
STAR_dimer	Pfam	STAR protein, homodimerisation region
KH_dom_type_1	Pfam	K Homology domain, type 1
KH_dom_type_1_sf	Gene3D	K Homology domain, type 1 superfamily
KH_dom_type_1_sf	SUPERFAMILY	K Homology domain, type 1 superfamily

GOSlim

23 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Orthology	cellular component
mRNA processing	Orthology	biological process
multicellular organism development	Orthology	biological process
RNA splicing	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
cell differentiation	Orthology	biological process
identical protein binding	Blast	molecular function
protein heterodimerization activity	Blast	molecular function
blood vessel morphogenesis	Orthology	biological process
regulation of gene expression	Orthology	biological process
spermatogenesis	Orthology	biological process
cell development	Orthology	biological process
cellular process	Orthology	biological process
nervous system development	Orthology	biological process
anatomical structure development	Orthology	biological process
cellular biosynthetic process	Orthology	biological process
organic substance transport	Orthology	biological process
mRNA catabolic process	Orthology	biological process

GO (Orthology)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
vasculogenesis	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
mRNA processing	Hs	biological process
regulation of translation	Hs	biological process
multicellular organism development	Hs	biological process
spermatid development	Hs	biological process
axon ensheathment	Hs	biological process
RNA splicing	Hs	biological process
positive regulation of gene expression	Hs	biological process
SH3 domain binding	Hs	molecular function
cell differentiation	Hs	biological process
myelination	Hs	biological process
muscle cell differentiation	Hs	biological process
long-chain fatty acid biosynthetic process	Hs	biological process
mRNA transport	Hs	biological process
3'-UTR-mediated mRNA destabilization	Hs	biological process

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	301	1.26e-100
RNA binding	Hs	molecular function	301	1.26e-100
mRNA binding	Hs	molecular function	301	1.26e-100
protein binding	Hs	molecular function	301	1.26e-100
nucleus	Hs	cellular component	301	1.26e-100
nucleoplasm	Hs	cellular component	139	5.01e-38
cytoplasm	Hs	cellular component	301	1.26e-100
poly(A) binding	Hs	molecular function	139	5.01e-38
poly(U) RNA binding	Hs	molecular function	139	5.01e-38
SH3 domain binding	Hs	molecular function	301	1.26e-100
protein domain specific binding	Hs	molecular function	126	5.08e-33
SH2 domain binding	Hs	molecular function	139	5.01e-38
identical protein binding	Hs	molecular function	139	5.01e-38
protein heterodimerization activity	Hs	molecular function	139	5.01e-38

GO (InterProScan)