Aniseed - Gene card

Gene Card

Best human hits

LNX2; LONRF2; RNF146

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013702

Gene Model ID

KH2012:KH.S1206.2

Location

KhS1206:6228..9365

Transcript Models and Sequences

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000019008
NCBI Reference Sequence	XM_002126085.4
NCBI Reference Sequence	XM_002126112.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb018a09

Plate: R1CiGC31e17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term	Analysis	Definition
WWE-dom	Pfam	WWE domain
Znf_RING	ProSiteProfiles	Zinc finger, RING-type
Znf_RING	SMART	Zinc finger, RING-type
WWE-dom_subgr	SMART	WWE domain, subgroup
WWE-dom	ProSiteProfiles	WWE domain
Znf_RING/FYVE/PHD	Gene3D	Zinc finger, RING/FYVE/PHD-type
RNF146	PANTHER	E3 ubiquitin-protein ligase RNF146
Znf_RING_CS	ProSitePatterns	Zinc finger, RING-type, conserved site
WWE_dom_sf	SUPERFAMILY	WWE domain superfamily
WWE_dom_sf	Gene3D	WWE domain superfamily
Ribosomal_S27/S33_mit	Pfam	Ribosomal protein S27/S33, mitochondrial
Ribosomal_S27/S33_mit	PANTHER	Ribosomal protein S27/S33, mitochondrial

GOSlim

20 results

GO Term	Annotation Origin	Type
protein polyubiquitination	Orthology	biological process
ubiquitin-protein transferase activity	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Blast	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
plasma membrane	Orthology	cellular component
zinc ion binding	Orthology	molecular function
protein ubiquitination	Orthology	biological process
transferase activity	Orthology	molecular function
metal ion binding	Orthology	molecular function
positive regulation of canonical Wnt signaling pathway	Orthology	biological process
proteolysis	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
cell-cell signaling	Orthology	biological process
peptidase activity, acting on L-amino acid peptides	Orthology	molecular function
carbohydrate derivative binding	Orthology	molecular function
enzyme binding	Blast	molecular function

GO (Orthology)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
ubiquitin-protein transferase activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
plasma membrane	Hs	cellular component
ubiquitin-dependent protein catabolic process	Hs	biological process
zinc ion binding	Hs	molecular function
Wnt signaling pathway	Hs	biological process
protein ubiquitination	Hs	biological process
protein deubiquitination	Hs	biological process
transferase activity	Hs	molecular function
metal ion binding	Hs	molecular function
protein autoubiquitination	Hs	biological process
ubiquitin protein ligase activity	Hs	molecular function
protein K48-linked ubiquitination	Hs	biological process
poly-ADP-D-ribose binding	Hs	molecular function
positive regulation of canonical Wnt signaling pathway	Hs	biological process

GO (Blast)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
ubiquitin-protein transferase activity	Hs	molecular function	188	4.50e-59
protein binding	Hs	molecular function	188	4.50e-59
intracellular	Hs	cellular component	42.7	6.60e-05
nucleus	Hs	cellular component	188	4.50e-59
nucleoplasm	Hs	cellular component	188	4.50e-59
cytoplasm	Hs	cellular component	188	4.50e-59
cytosol	Hs	cellular component	188	4.50e-59
plasma membrane	Hs	cellular component	188	4.50e-59
zinc ion binding	Hs	molecular function	188	4.50e-59
transferase activity	Hs	molecular function	188	4.50e-59
PDZ domain binding	Hs	molecular function	46.2	3.81e-06
ubiquitin conjugating enzyme binding	Hs	molecular function	42.7	6.60e-05
metal ion binding	Hs	molecular function	188	4.50e-59
ubiquitin protein ligase activity	Hs	molecular function	188	4.50e-59
poly-ADP-D-ribose binding	Hs	molecular function	188	4.50e-59

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
zinc ion binding	SMART	molecular function	1.3E-21
Wnt signaling pathway	PANTHER	biological process	2.0E-70
ubiquitin protein ligase activity	PANTHER	molecular function	2.0E-70
poly-ADP-D-ribose binding	PANTHER	molecular function	2.0E-70