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GENE CARD

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Gene Card

Best human hits

TBX19; TBX6; TBXT

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013858

Gene Model ID

KH2012:KH.S1404.1

Location

KhS1404:6231..8022

Transcript Models and Sequences

  KH2012:KH.S1404.1.v1.A.nonSL4-1
KH2012:KH.S1404.1.v1.A.nonSL5-1
KH2012:KH.S1404.1.v1.A.nonSL6-1
KH2012:KH.S1404.1.v1.A.nonSL7-1
KH2012:KH.S1404.1.v1.R.nonSL1-1
KH2012:KH.S1404.1.v1.R.nonSL2-1
KH2012:KH.S1404.1.v1.R.nonSL3-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000000810
NCBI Reference Sequence NM_001078478.1
Collections

Gene collection 1 (N. Satoh)

2 results

cicl050d03

Plate: R1CiGC13h10

citb058l22

Plate: R1CiGC45p24

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

30 results

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
T-box_sf Gene3D T-box superfamily
TF_T-box Pfam Transcription factor, T-box
TF_T-box PRINTS Transcription factor, T-box
TF_T-box_CS ProSitePatterns Transcription factor, T-box, conserved site
TF_T-box PANTHER Transcription factor, T-box
TF_Brachyury PRINTS Transcription factor, Brachyury
p53-like_TF_DNA-bd SUPERFAMILY p53-like transcription factor, DNA-binding
TF_T-box SMART Transcription factor, T-box
TF_T-box CDD Transcription factor, T-box
TF_T-box ProSiteProfiles Transcription factor, T-box

GOSlim

15 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
cytoplasm Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
sequence-specific DNA binding Blast molecular function
intracellular organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
transcription factor binding Blast molecular function
transcription regulatory region sequence-specific DNA binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
chromatin Hs cellular component 294 1.30e-95
nuclear chromatin Hs cellular component 294 1.30e-95
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 294 1.30e-95
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 294 1.30e-95
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 294 1.30e-95
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 282 1.11e-90
RNA polymerase II transcription factor binding Hs molecular function 294 1.30e-95
RNA polymerase II activating transcription factor binding Hs molecular function 294 1.30e-95
enhancer sequence-specific DNA binding Hs molecular function 282 1.11e-90
transcriptional repressor activity, RNA polymerase II transcription factor binding Hs molecular function 294 1.30e-95
DNA binding Hs molecular function 294 1.30e-95
transcription factor activity, sequence-specific DNA binding Hs molecular function 294 1.30e-95
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 294 1.30e-95
protein binding Hs molecular function 193 1.19e-56
nucleus Hs cellular component 294 1.30e-95
cytoplasm Hs cellular component 294 1.30e-95
sequence-specific DNA binding Hs molecular function 294 1.30e-95

GO (InterProScan)

3 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding PANTHER molecular function 8.9E-169
nucleus PANTHER cellular component 8.9E-169
regulation of transcription, DNA-templated PANTHER biological process 8.9E-169

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