Aniseed - Gene card

Gene Card

Best human hits

OTUD4; YOD1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013993

Gene Model ID

KH2012:KH.S164.16

Location

KhS164:207384..208715

Transcript Models and Sequences

KH2012:KH.S164.16.v1.A.ND1-1
KH2012:KH.S164.16.v1.A.nonSL3-1
KH2012:KH.S164.16.v1.A.SL2-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000022937
NCBI Reference Sequence	XM_002126701.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl022a01

Plate: R1CiGC11c18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
OTU_dom	Pfam	OTU domain
OTU_dom	ProSiteProfiles	OTU domain
Ubiquitin-like_domsf	SUPERFAMILY	Ubiquitin-like domain superfamily

GOSlim

18 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
RNA binding	Blast	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
proteolysis	Orthology	biological process
peptidase activity	Orthology	molecular function
hydrolase activity	Orthology	molecular function
ubiquitin protein ligase binding	Orthology	molecular function
metal ion binding	Orthology	molecular function
peptidase activity, acting on L-amino acid peptides	Orthology	molecular function
response to stress	Orthology	biological process
response to organic substance	Orthology	biological process
cellular response to stress	Orthology	biological process
signal transduction	Orthology	biological process
cellular response to organic substance	Orthology	biological process
intracellular protein transport	Orthology	biological process

GO (Orthology)

27 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleic acid binding	Hs	molecular function
thiol-dependent ubiquitin-specific protease activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
proteolysis	Hs	biological process
response to unfolded protein	Hs	biological process
peptidase activity	Hs	molecular function
cysteine-type peptidase activity	Hs	molecular function
macroautophagy	Hs	biological process
protein deubiquitination	Hs	biological process
hydrolase activity	Hs	molecular function
ubiquitin-dependent ERAD pathway	Hs	biological process
endoplasmic reticulum unfolded protein response	Hs	biological process
ubiquitin protein ligase binding	Hs	molecular function
protein K29-linked deubiquitination	Hs	biological process
protein K11-linked deubiquitination	Hs	biological process
thiol-dependent ubiquitinyl hydrolase activity	Hs	molecular function
metal ion binding	Hs	molecular function
Lys63-specific deubiquitinase activity	Hs	molecular function
protein K63-linked deubiquitination	Hs	biological process
protein K48-linked deubiquitination	Hs	biological process
ubiquitin-specific protease activity involved in negative regulation of retrograde protein transport, ER to cytosol	Hs	molecular function
protein K27-linked deubiquitination	Hs	biological process
protein K33-linked deubiquitination	Hs	biological process
Lys48-specific deubiquitinase activity	Hs	molecular function

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	263	6.24e-87
RNA binding	Hs	molecular function	38.5	0.005
thiol-dependent ubiquitin-specific protease activity	Hs	molecular function	263	6.24e-87
protein binding	Hs	molecular function	263	6.24e-87
nucleus	Hs	cellular component	263	6.24e-87
cytoplasm	Hs	cellular component	263	6.24e-87
cytosol	Hs	cellular component	263	6.24e-87
peptidase activity	Hs	molecular function	263	6.24e-87
cysteine-type peptidase activity	Hs	molecular function	263	6.24e-87
hydrolase activity	Hs	molecular function	263	6.24e-87
ubiquitin protein ligase binding	Hs	molecular function	263	6.24e-87
protein complex scaffold activity	Hs	molecular function	38.5	0.005
thiol-dependent ubiquitinyl hydrolase activity	Hs	molecular function	263	6.24e-87
metal ion binding	Hs	molecular function	263	6.24e-87
Lys63-specific deubiquitinase activity	Hs	molecular function	263	6.24e-87
ubiquitin-specific protease activity involved in negative regulation of retrograde protein transport, ER to cytosol	Hs	molecular function	263	6.24e-87
Lys48-specific deubiquitinase activity	Hs	molecular function	263	6.24e-87

GO (InterProScan)