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Gene Card

Best human hits

VPS18

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014012

Gene Model ID

KH2012:KH.S164.4

Location

KhS164:67949..76355

Transcript Models and Sequences

  KH2012:KH.S164.4.v1.A.ND1-2
KH2012:KH.S164.4.v2.A.ND1-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XM_018816691.1
Collections

Gateway full ORF

2 results

cien51253

Plate: VES78_I07

cima881850

Plate: VES68_K24

Gene collection 1 (N. Satoh)

1 result

cieg004l11

Plate: R1CiGC16i09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
TPR-like_helical_dom_sf Gene3D Tetratricopeptide-like helical domain superfamily
Clathrin_H-chain/VPS_repeat ProSiteProfiles Clathrin, heavy chain/VPS, 7-fold repeat
VPS39/TGF_beta_rcpt-assoc_2 Pfam Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2
Pep3_Vps18 Pfam Pep3/Vps18/deep orange

GOSlim

22 results

GO Term Annotation Origin Type
actin binding Orthology molecular function
protein binding Orthology molecular function
lysosome Orthology cellular component
lysosomal membrane Orthology cellular component
endosome Orthology cellular component
early endosome Orthology cellular component
intracellular protein transport Orthology biological process
protein transport Orthology biological process
membrane Orthology cellular component
cytoplasmic vesicle Orthology cellular component
metal ion binding Orthology molecular function
vacuole Orthology cellular component
cytoskeletal part Orthology cellular component
membrane organization Orthology biological process
organelle organization Orthology biological process
intracellular transport Orthology biological process
cytoplasmic part Orthology cellular component
membrane part Orthology cellular component
macromolecular complex Orthology cellular component
intracellular organelle part Orthology cellular component
whole membrane Orthology cellular component
bounding membrane of organelle Orthology cellular component

GO (Orthology)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
actin binding Hs molecular function
protein binding Hs molecular function
lysosome Hs cellular component
lysosomal membrane Hs cellular component
endosome Hs cellular component
early endosome Hs cellular component
late endosome Hs cellular component
autophagosome Hs cellular component
actin filament Hs cellular component
intracellular protein transport Hs biological process
vesicle docking involved in exocytosis Hs biological process
autophagy Hs biological process
endosome organization Hs biological process
lysosome organization Hs biological process
endosome to lysosome transport Hs biological process
protein transport Hs biological process
membrane Hs cellular component
vesicle-mediated transport Hs biological process
syntaxin binding Hs molecular function
AP-3 adaptor complex Hs cellular component
clathrin-coated vesicle Hs cellular component
protein binding, bridging Hs molecular function
HOPS complex Hs cellular component
cytoplasmic vesicle Hs cellular component
late endosome membrane Hs cellular component
CORVET complex Hs cellular component
regulation of SNARE complex assembly Hs biological process
viral entry into host cell Hs biological process
metal ion binding Hs molecular function

GO (Blast)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
actin binding Hs molecular function 547 0.0
protein binding Hs molecular function 547 0.0
lysosome Hs cellular component 547 0.0
lysosomal membrane Hs cellular component 547 0.0
endosome Hs cellular component 547 0.0
early endosome Hs cellular component 547 0.0
late endosome Hs cellular component 547 0.0
autophagosome Hs cellular component 547 0.0
actin filament Hs cellular component 547 0.0
membrane Hs cellular component 547 0.0
syntaxin binding Hs molecular function 547 0.0
AP-3 adaptor complex Hs cellular component 547 0.0
clathrin-coated vesicle Hs cellular component 547 0.0
protein binding, bridging Hs molecular function 547 0.0
HOPS complex Hs cellular component 547 0.0
cytoplasmic vesicle Hs cellular component 547 0.0
late endosome membrane Hs cellular component 547 0.0
CORVET complex Hs cellular component 547 0.0
metal ion binding Hs molecular function 547 0.0

GO (InterProScan)

3 results

GO Term Analysis Type e-value
protein binding Gene3D molecular function 5.3E-8
intracellular protein transport ProSiteProfiles biological process 18.815
vesicle-mediated transport ProSiteProfiles biological process 18.815

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