Aniseed - Gene card

Gene Card

Best human hits

DR1; NFYB; POLE3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014089

Gene Model ID

KH2012:KH.S1818.1

Location

KhS1818:3869..4988

Transcript Models and Sequences

KH2012:KH.S1818.1.v1.B.SL1-1
KH2012:KH.S1818.1.v1.B.SL2-1

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Histone-fold	SUPERFAMILY	Histone-fold
Transcrpt_fac_NFYB/HAP3_CS	ProSitePatterns	Transcription factor, NFYB/HAP3, conserved site
Histone-fold	Gene3D	Histone-fold
CBFA_NFYB_domain	Pfam	Transcription factor CBF/NF-Y/archaeal histone domain

GOSlim

21 results

GO Term	Annotation Origin	Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
transcription corepressor activity	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
regulation of transcription, DNA-templated	InterProScan	biological process
transcription factor binding	Blast	molecular function
transferase activity	Blast	molecular function
sequence-specific DNA binding	Blast	molecular function
transcription regulatory region DNA binding	Blast	molecular function
protein heterodimerization activity	Blast	molecular function
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
transferase activity, transferring phosphorus-containing groups	Blast	molecular function
DNA metabolic process	Blast	biological process
nucleoplasm part	Blast	cellular component
macromolecular complex	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component
nuclear lumen	Blast	cellular component
nuclear part	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

22 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	184	1.88e-60
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	184	1.88e-60
DNA binding	Hs	molecular function	184	1.88e-60
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	184	1.88e-60
transcription corepressor activity	Hs	molecular function	69.3	9.03e-16
DNA-directed DNA polymerase activity	Hs	molecular function	67.0	3.42e-15
protein binding	Hs	molecular function	184	1.88e-60
nucleus	Hs	cellular component	184	1.88e-60
nucleoplasm	Hs	cellular component	184	1.88e-60
Ada2/Gcn5/Ada3 transcription activator complex	Hs	cellular component	69.3	9.03e-16
transcription factor binding	Hs	molecular function	69.3	9.03e-16
epsilon DNA polymerase complex	Hs	cellular component	67.0	3.42e-15
CCAAT-binding factor complex	Hs	cellular component	184	1.88e-60
transferase activity	Hs	molecular function	67.0	3.42e-15
nucleotidyltransferase activity	Hs	molecular function	67.0	3.42e-15
TBP-class protein binding	Hs	molecular function	69.3	9.03e-16
protein-DNA complex	Hs	cellular component	184	1.88e-60
sequence-specific DNA binding	Hs	molecular function	184	1.88e-60
transcription regulatory region DNA binding	Hs	molecular function	184	1.88e-60
protein heterodimerization activity	Hs	molecular function	184	1.88e-60
repressing transcription factor binding	Hs	molecular function	184	1.88e-60
RNA polymerase II transcription factor complex	Hs	cellular component	184	1.88e-60

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
nucleus	ProSitePatterns	cellular component
regulation of transcription, DNA-templated	ProSitePatterns	biological process
sequence-specific DNA binding	ProSitePatterns	molecular function
protein heterodimerization activity	Gene3D	molecular function	1.4E-40