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GENE CARD

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Gene Card

Best human hits

LHX3; LHX4; LHX5

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014215

Gene Model ID

KH2012:KH.S215.4

Location

KhS215:96002..105573

Transcript Models and Sequences

  KH2012:KH.S215.4.v1.A.nonSL2-1
KH2012:KH.S215.4.v1.A.nonSL5-1
KH2012:KH.S215.4.v1.A.nonSL6-1
KH2012:KH.S215.4.v1.A.nonSL7-1
KH2012:KH.S215.4.v1.R.nonSL3-1
KH2012:KH.S215.4.v1.R.nonSL4-1
KH2012:KH.S215.4.v2.A.SL1-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000009072
NCBI Reference Sequence NM_001078287.1
NCBI Reference Sequence XM_009861448.1
Collections

Gene collection 1 (N. Satoh)

1 result

cilv006c13

Plate: R1CiGC25m02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

1 results

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
Znf_LIM Pfam Zinc finger, LIM-type
Znf_LIM SMART Zinc finger, LIM-type
Znf_LIM ProSiteProfiles Zinc finger, LIM-type
Homeobox_dom CDD Homeobox domain
Znf_LIM ProSitePatterns Zinc finger, LIM-type
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_dom SMART Homeobox domain
Homeobox_dom ProSiteProfiles Homeobox domain
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox_dom Pfam Homeobox domain

GOSlim

26 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Orthology molecular function
DNA binding Orthology molecular function
protein binding Orthology molecular function
intracellular Orthology cellular component
nucleus Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
cell differentiation Orthology biological process
negative regulation of apoptotic process Orthology biological process
sequence-specific DNA binding Orthology molecular function
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
metal ion binding Orthology molecular function
transcription factor binding Orthology molecular function
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
axon guidance Orthology biological process
animal organ development Orthology biological process
anatomical structure morphogenesis Orthology biological process
multicellular organism development Orthology biological process
neuron differentiation Orthology biological process
central nervous system development Orthology biological process
brain development Orthology biological process

GO (Orthology)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription factor activity, RNA polymerase II transcription factor binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
RNA polymerase II transcription factor binding Hs molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
DNA binding Hs molecular function
protein binding Hs molecular function
intracellular Hs cellular component
nucleus Hs cellular component
transcription factor complex Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
motor neuron axon guidance Hs biological process
animal organ morphogenesis Hs biological process
dorsal/ventral pattern formation Hs biological process
spinal cord motor neuron cell fate specification Hs biological process
ventral spinal cord interneuron specification Hs biological process
spinal cord association neuron differentiation Hs biological process
pituitary gland development Hs biological process
cell differentiation Hs biological process
lung development Hs biological process
negative regulation of apoptotic process Hs biological process
sequence-specific DNA binding Hs molecular function
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function
inner ear development Hs biological process

GO (Blast)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 335 8.49e-110
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 335 8.49e-110
transcription factor activity, RNA polymerase II transcription factor binding Hs molecular function 335 8.49e-110
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 335 8.49e-110
RNA polymerase II transcription factor binding Hs molecular function 335 8.49e-110
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 335 8.49e-110
DNA binding Hs molecular function 335 8.49e-110
protein binding Hs molecular function 332 5.60e-109
intracellular Hs cellular component 335 8.49e-110
nucleus Hs cellular component 335 8.49e-110
transcription factor complex Hs cellular component 335 8.49e-110
sequence-specific DNA binding Hs molecular function 335 8.49e-110
metal ion binding Hs molecular function 335 8.49e-110

GO (InterProScan)

3 results

GO Term Analysis Type e-value
DNA binding SMART molecular function 1.5E-21
regulation of transcription, DNA-templated ProSitePatterns biological process
sequence-specific DNA binding ProSitePatterns molecular function

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